Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008275.1 Corchorus capsularis cultivar CVL-1 contig08296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22291

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1171--1202
9
3.6
9
91
0
55
50
0
9
40
1.35
3843--3867
12
2.1
12
100
0
50
8
0
24
68
1.16
3849--3895
15
3.0
15
77
22
60
10
2
19
68
1.30
5549--5577
12
2.3
13
94
5
51
37
0
0
62
0.96
6695--6731
18
2.1
18
100
0
74
40
0
21
37
1.54
13768--13903
31
4.5
31
73
10
127
36
16
19
27
1.93
13936--14098
60
2.7
60
91
1
256
27
19
18
34
1.95
13995--14106
31
3.7
29
72
14
93
26
18
18
35
1.95
17728--17772
13
3.5
13
90
3
74
22
13
8
55
1.65
17769--17795
6
4.5
6
100
0
54
29
0
14
55
1.40
17816--17848
15
2.3
15
89
5
50
27
9
6
57
1.53
18172--18251
36
2.1
35
80
11
88
26
11
5
57
1.54

Tables:   1

The End!