Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008276.1 Corchorus capsularis cultivar CVL-1 contig08297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46274

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4489--4557
27
2.5
28
88
6
106
15
17
21
44
1.86
7190--7262
29
2.4
30
73
13
69
28
9
30
31
1.89
18694--18758
20
3.2
19
74
18
58
53
7
3
35
1.45
21114--21185
29
2.4
30
79
6
83
29
23
13
33
1.93
25820--25853
15
2.2
16
90
10
54
14
14
11
58
1.63
26607--26648
20
2.0
21
86
13
61
35
0
14
50
1.43
27692--27721
13
2.3
13
100
0
60
13
6
0
80
0.91
31079--31112
6
5.7
6
89
10
52
0
0
14
85
0.60
31070--31137
11
6.3
11
80
10
68
4
2
14
77
1.04
33090--33124
18
1.9
18
88
0
52
42
5
31
20
1.75
37058--37238
92
2.0
91
81
3
211
51
17
14
16
1.77
40572--40596
2
12.5
2
100
0
50
52
0
0
48
1.00
42285--42309
9
2.8
9
100
0
50
48
0
8
44
1.32
42733--42771
19
2.1
19
90
0
60
23
30
10
35
1.88
42831--43769
200
4.7
195
86
3
1177
33
12
18
34
1.89

Tables:   1

The End!