genome.fa.s8277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008277.1 Corchorus capsularis cultivar CVL-1 contig08298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135408

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3052--3498	234	1.9	234	84	3	603	21	20	25	32	1.98
3669--3700	17	1.9	16	93	6	55	28	25	25	21	1.99
3746--3770	13	1.9	13	100	0	50	4	32	0	64	1.12
5422--5511	27	3.3	27	73	6	101	18	40	16	24	1.91
7566--7595	2	15.0	2	100	0	60	50	0	0	50	1.00
7787--7849	32	2.0	32	90	0	99	33	25	22	19	1.97
8536--8633	43	2.3	43	80	3	108	37	9	12	40	1.75
8519--8883	22	16.5	22	70	9	186	38	9	15	36	1.80
8926--9224	22	14.0	22	66	13	79	35	8	18	37	1.82
9029--9072	21	2.0	22	86	4	63	34	4	15	45	1.67
9315--9379	22	3.0	22	78	17	80	44	9	18	27	1.80
13378--13461	29	2.6	34	76	18	115	42	19	4	33	1.72
13767--13863	48	2.0	48	97	0	185	30	4	31	32	1.77
14674--14708	6	5.8	6	100	0	70	51	17	0	31	1.45
16244--16283	10	3.7	12	75	25	52	67	5	5	22	1.30
28666--28849	91	2.0	91	98	0	359	36	15	21	26	1.93
36910--36942	7	4.9	7	85	7	50	69	12	0	18	1.18
36947--37073	52	2.4	52	88	0	200	33	18	12	36	1.88
42580--42642	27	2.3	26	81	5	72	55	6	12	25	1.60
43127--43166	21	1.9	21	85	10	55	25	30	12	32	1.92
43164--43208	14	2.9	16	80	16	58	17	26	2	53	1.56
43401--43478	34	2.4	34	91	4	124	16	35	35	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53249--53276	6	4.7	6	100	0	56	17	17	14	50	1.79
57482--57524	16	2.7	16	96	0	77	41	25	0	32	1.56
57516--57540	13	1.9	13	100	0	50	40	8	0	52	1.31
60080--60124	22	2.0	22	95	0	81	48	22	11	17	1.78
66859--66907	19	2.5	20	78	15	50	14	36	0	48	1.44
68616--68685	24	3.0	23	66	26	58	37	11	18	32	1.87
68595--68685	45	2.0	45	95	0	164	37	10	17	34	1.85
68594--68665	21	3.3	21	67	24	58	37	11	15	36	1.83
68613--68692	26	3.4	24	69	24	71	37	11	18	32	1.87
73006--73044	13	3.0	13	92	0	51	43	10	10	35	1.73
73565--73592	4	7.0	4	100	0	56	75	0	0	25	0.81
76430--76460	15	2.0	16	93	6	55	6	29	12	51	1.65
76623--76727	52	2.0	52	100	0	210	26	22	5	44	1.75
78000--78054	24	2.3	24	87	0	74	32	27	14	25	1.95
91437--91463	13	2.1	13	100	0	54	37	0	48	14	1.45
92051--92085	2	18.5	2	88	11	56	48	0	0	51	1.00
92052--92090	13	3.2	13	86	13	57	51	0	0	48	1.00
92051--92085	15	2.3	15	95	0	61	48	0	0	51	1.00
92051--92085	17	2.1	17	94	0	61	48	0	0	51	1.00
92090--92153	31	2.1	31	90	0	101	54	3	12	29	1.53
93361--93402	21	2.0	21	86	4	59	35	23	19	21	1.96
122500--122628	15	8.5	15	73	19	92	51	0	1	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122501--122644	43	3.3	42	72	22	127	49	0	1	48	1.14
122513--122628	30	4.1	28	74	17	105	52	0	1	44	1.17
122519--122631	13	8.8	13	72	19	78	52	0	1	45	1.17
122490--122629	28	5.3	27	69	22	100	52	0	2	44	1.18
125583--125625	11	3.9	11	85	8	61	44	0	2	53	1.13
135184--135231	18	2.8	17	75	12	53	31	2	0	66	1.03
135225--135408	80	2.5	71	80	12	217	38	13	0	48	1.42
135261--135408	78	1.9	79	94	2	262	37	15	0	46	1.46

Tables:   1

The End!