Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008279.1 Corchorus capsularis cultivar CVL-1 contig08300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62619

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1137--1181
21
2.1
22
83
4
56
17
31
8
42
1.80
4619--4672
22
2.5
22
90
0
90
0
29
40
29
1.57
4691--4757
33
2.0
33
88
0
98
14
37
28
19
1.91
5137--5164
12
2.3
12
100
0
56
35
14
42
7
1.73
5131--5191
30
2.0
30
87
6
88
34
14
40
9
1.79
5435--5502
12
5.4
12
72
16
57
36
1
5
55
1.33
12086--12137
26
2.0
26
96
0
95
13
3
28
53
1.57
12169--12262
46
2.0
46
100
0
188
24
6
25
43
1.78
12415--12461
2
26.5
2
76
23
52
48
0
0
51
1.00
12414--12461
21
2.4
20
80
13
55
50
0
0
50
1.00
20905--20979
30
2.5
31
82
6
91
29
26
16
28
1.96
23173--23212
20
2.0
20
90
0
62
22
20
20
37
1.94
23200--23282
42
2.0
43
85
7
116
36
24
16
22
1.95
25946--26204
108
2.4
106
89
3
380
41
7
8
42
1.63
32725--32766
21
2.0
21
100
0
84
42
14
14
28
1.84
33323--33387
30
2.1
31
91
2
105
26
16
4
52
1.63
33329--33394
30
2.1
31
88
5
98
30
13
4
51
1.61
33439--33472
15
2.2
16
89
5
52
41
2
5
50
1.42
33582--33828
22
11.3
22
73
9
166
42
9
14
34
1.78
33637--33855
22
9.8
23
75
6
100
42
9
13
35
1.76
33705--33852
44
3.4
44
76
10
151
44
10
12
33
1.75
33977--34144
22
7.5
22
69
12
92
43
8
14
33
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34109--34155
22
2.1
22
92
0
76
34
10
14
40
1.81
34109--34164
22
2.5
23
83
13
73
35
12
12
39
1.81
34186--34248
22
2.8
22
78
2
54
31
14
17
36
1.90
34164--34248
44
1.9
45
80
7
102
30
11
17
40
1.86
34193--34248
22
2.5
22
82
2
67
30
12
19
37
1.89
34268--34339
20
3.4
22
77
11
69
50
8
15
26
1.72
34269--34330
22
2.9
23
81
9
69
53
4
16
25
1.62
36718--36747
2
15.0
2
100
0
60
50
0
0
50
1.00
37492--37520
2
15.0
2
92
7
51
48
0
51
0
1.00
37494--37519
13
2.0
13
100
0
52
46
0
53
0
1.00
37492--37520
15
1.9
15
100
0
58
48
0
51
0
1.00
58491--58533
11
3.9
11
90
0
68
46
6
4
41
1.51
58487--58533
22
2.1
22
96
0
85
46
6
4
42
1.48
60861--60982
39
3.2
39
86
5
171
23
6
51
18
1.69

Tables:   1

The End!