Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008283.1 Corchorus capsularis cultivar CVL-1 contig08304, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2071
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37


Found at i:164 original size:21 final size:19

Alignment explanation


    Indices: 140--186  Score: 60
    Period size: 19  Copynumber: 2.4  Consensus size: 19

        130 AAAGTTCGTG

                                 
        140 TTTGAAGATTTTTGAAGATAA
          1 TTTGAAGA--TTTGAAGATAA

                             * 
        161 TTTGAAGATTTGAAGATCA
          1 TTTGAAGATTTGAAGATAA

                    
        180 -TTGAAGA
          1 TTTGAAGA

        187 ATTATTTCAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  18    7  0.28
  19   10  0.40
  21    8  0.32

ACGTcount: A:0.38, C:0.02, G:0.21, T:0.38


Consensus pattern (19 bp):   
TTTGAAGATTTGAAGATAA
Done.