genome.fa.s8284.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008284.1 Corchorus capsularis cultivar CVL-1 contig08305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57617

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3822--3895	33	2.4	30	88	6	103	35	10	5	48	1.61
5100--5782	41	16.1	41	79	11	648	46	11	17	24	1.81
5102--5844	126	5.9	126	82	9	676	45	11	18	24	1.82
5100--5782	212	3.2	208	83	6	831	46	11	17	24	1.81
5790--5906	36	3.2	36	83	6	128	45	10	17	27	1.80
5939--6081	39	3.5	41	87	5	202	46	13	17	22	1.82
6063--6165	36	2.9	36	92	5	167	50	12	11	25	1.74
6200--6562	37	9.8	37	92	0	478	43	7	24	25	1.79
6291--6351	18	3.3	18	70	20	63	47	6	22	22	1.74
6538--6608	32	2.2	32	100	0	142	35	11	23	29	1.90
6554--6774	36	6.2	35	88	6	261	40	10	21	27	1.86
9889--10615	363	2.0	363	93	1	1242	35	10	16	37	1.82
10979--11017	12	3.2	12	85	3	51	30	0	0	69	0.89
20638--20686	19	2.7	18	84	12	64	40	2	2	55	1.23
21619--21669	26	1.9	27	92	4	86	29	25	21	23	1.99
35240--35291	27	1.9	27	84	7	70	46	21	13	19	1.84
37118--37151	6	5.5	6	93	6	59	52	14	0	32	1.42
37118--37148	13	2.5	13	94	5	55	48	16	0	35	1.46
44817--44856	21	1.9	21	84	0	53	27	20	20	32	1.97
45021--45063	21	2.0	21	90	0	68	23	30	23	23	1.99
45092--45134	21	2.0	21	86	0	59	25	34	23	16	1.95
51644--51715	30	2.4	30	92	0	117	18	6	31	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53034--53136	33	3.1	33	79	5	109	27	9	19	43	1.82
53579--53641	30	2.1	30	88	5	92	28	17	33	20	1.95
53685--53722	18	2.1	19	90	5	60	28	13	39	18	1.88
55909--55992	36	2.4	36	83	2	107	45	26	7	21	1.77

Tables:   1

The End!