Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008286.1 Corchorus capsularis cultivar CVL-1 contig08307, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56798

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3307--3340
17
2.0
17
100
0
68
11
5
11
70
1.32
12799--12853
12
4.5
12
93
4
92
32
16
25
25
1.96
12799--12853
25
2.2
25
93
3
94
32
16
25
25
1.96
13594--13629
3
12.3
3
88
5
56
33
33
0
33
1.58
14344--14382
12
3.6
12
74
25
50
30
15
28
25
1.96
25080--25115
9
4.2
8
89
10
54
72
0
27
0
0.85
25894--26404
35
14.7
35
89
2
726
38
9
18
33
1.83
28642--28679
19
2.0
19
90
10
60
26
10
23
39
1.87
34047--34116
33
2.1
33
97
0
131
48
5
21
24
1.71
34614--34649
2
18.0
2
100
0
72
0
0
50
50
1.00
35629--35662
12
3.0
12
91
8
54
58
0
0
41
0.98
39503--39532
13
2.4
13
94
5
53
90
3
0
6
0.56
42766--42799
17
1.9
18
88
5
52
14
0
26
58
1.36
49247--49281
10
3.5
10
84
0
52
62
0
37
0
0.95
50405--50472
28
2.5
27
81
9
84
36
17
13
32
1.89
50819--50856
13
2.7
14
84
12
51
28
2
13
55
1.51
53076--53109
16
2.1
16
100
0
68
35
5
20
38
1.77
55147--55251
30
3.5
30
74
10
106
28
23
22
24
1.99
56119--56185
34
2.1
33
86
8
93
13
20
8
56
1.64

Tables:   1

The End!