Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008291.1 Corchorus capsularis cultivar CVL-1 contig08312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60615

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
677--904
51
4.5
51
87
3
273
24
34
16
25
1.95
813--955
51
2.8
51
93
2
234
18
41
16
24
1.90
677--955
102
2.7
102
79
7
264
23
35
16
24
1.94
2497--2522
10
2.6
10
100
0
52
50
19
7
23
1.73
3449--3480
6
5.5
6
96
3
57
31
0
12
56
1.37
5846--5954
32
3.4
32
84
0
137
33
17
28
21
1.96
6084--6261
34
5.3
34
92
0
286
27
24
20
28
1.99
6744--6814
37
1.9
37
94
0
124
36
16
8
38
1.80
6828--6990
60
2.7
60
95
0
281
33
19
20
25
1.97
6859--6959
29
3.4
29
71
15
89
31
19
21
26
1.98
6827--6992
31
5.5
30
72
16
137
33
19
20
26
1.96
7021--7093
31
2.4
31
95
0
128
24
19
13
42
1.87
7053--7219
60
2.8
60
83
8
214
28
21
15
34
1.94
7021--7153
31
4.4
31
75
9
121
27
20
14
38
1.91
7084--7182
29
3.3
29
71
10
92
29
23
15
32
1.95
15059--15773
30
23.6
30
86
3
837
31
17
17
33
1.93
15059--15777
91
7.9
90
85
4
831
31
17
17
33
1.93
17409--17716
162
1.9
161
95
0
562
29
13
17
39
1.88
25870--25928
8
7.9
7
79
20
66
52
0
5
42
1.23
25871--25933
21
2.8
23
74
13
60
53
0
4
41
1.22
27039--27163
41
2.9
44
86
9
193
25
11
10
52
1.68
27198--27255
21
2.8
21
73
5
55
24
12
10
53
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29968--29993
13
2.0
13
100
0
52
7
7
23
61
1.49
38945--38996
19
2.6
19
74
17
52
25
3
21
50
1.65
40221--40342
24
5.1
24
83
0
127
27
17
33
22
1.96
40223--40327
48
2.2
48
94
0
192
27
17
32
22
1.96
40223--40342
48
2.5
48
90
0
168
27
16
33
22
1.96
40238--40342
24
4.4
24
85
0
129
26
16
34
22
1.95
41717--42203
165
3.0
165
100
0
974
26
17
16
39
1.91
50030--50055
6
4.3
6
100
0
52
65
0
34
0
0.93
50085--50125
6
6.8
6
88
0
64
46
2
48
2
1.28
50226--50318
32
3.0
29
82
13
105
35
6
9
48
1.62
50240--50318
32
2.5
32
95
0
140
32
5
8
53
1.54
50621--50660
19
2.1
19
100
0
80
15
20
10
55
1.68
56782--56837
28
2.0
28
92
0
94
44
17
14
23
1.85
58094--58125
13
2.5
13
94
0
55
25
9
6
59
1.52

Tables:   1

The End!