Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008292.1 Corchorus capsularis cultivar CVL-1 contig08313, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34631

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5089--5135
2
24.0
2
79
12
53
44
2
4
48
1.34
5600--5634
11
3.2
11
83
0
52
20
14
37
28
1.91
6070--6106
19
1.9
19
88
0
56
54
10
5
29
1.57
9840--9880
2
21.0
2
85
5
57
43
4
0
51
1.23
18464--18490
2
13.5
2
100
0
54
51
0
0
48
1.00
19850--19920
37
1.9
37
94
0
124
36
16
8
38
1.80
20335--20360
13
2.0
13
100
0
52
46
30
7
15
1.74
23149--23203
12
4.5
12
81
4
65
27
23
14
34
1.94
23149--23203
25
2.2
24
83
3
65
27
23
14
34
1.94
29029--29072
21
2.1
21
87
8
63
18
34
9
38
1.82
29302--29375
32
2.3
32
90
4
114
12
43
36
8
1.72
31736--31808
31
2.4
31
95
0
137
19
27
24
28
1.98
31913--32233
172
1.9
165
89
4
498
31
14
15
37
1.89
32982--34631
481
3.4
482
92
0
2691
29
16
19
33
1.94

Tables:   1

The End!