genome.fa.s8294.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008294.1 Corchorus capsularis cultivar CVL-1 contig08315, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29622

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6926--7012	33	2.7	33	89	1	122	11	32	40	16	1.84
7353--7402	22	2.2	22	85	7	64	22	14	10	54	1.69
12059--12109	24	2.1	24	92	0	84	21	37	0	41	1.54
13328--13361	13	2.6	13	90	0	59	14	17	32	35	1.91
14061--14116	27	2.1	27	86	6	78	14	23	3	58	1.51
16369--16928	22	25.7	21	69	14	187	36	14	9	39	1.79
16634--16737	46	2.3	45	81	3	120	41	13	6	38	1.71
16919--16985	19	3.5	19	89	2	98	25	20	10	43	1.84
18404--18736	58	5.8	58	95	3	552	20	13	27	38	1.90
18980--19107	22	5.8	22	75	13	120	38	10	9	41	1.73
19029--19067	21	2.0	19	85	14	53	41	7	5	46	1.55
18936--19141	66	3.2	64	77	11	168	35	13	9	41	1.76
18937--19256	22	14.4	22	67	14	111	36	15	9	39	1.80
19321--19481	22	7.2	22	82	9	96	36	19	11	32	1.87
19328--19452	46	2.8	45	82	4	137	36	17	10	35	1.84
19375--19481	22	4.9	22	91	4	171	33	17	14	34	1.90
19373--19494	22	5.6	21	86	6	129	31	18	13	35	1.91
19375--19504	66	2.0	66	83	3	163	34	19	13	33	1.90
19592--19657	31	2.1	31	91	0	105	48	6	19	25	1.72
19882--19964	42	2.0	43	85	7	116	36	21	16	25	1.94
22701--22865	31	5.5	31	66	13	101	36	20	18	25	1.94
22705--22867	60	2.7	60	83	3	220	36	20	17	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29586--29622	2	18.5	2	100	0	74	51	0	0	48	1.00

Tables:   1

The End!