Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008295.1 Corchorus capsularis cultivar CVL-1 contig08316, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16777
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:16 original size:2 final size:2

Alignment explanation


    Indices: 11--51  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

          1 GTGTGTGTNG

                                                                         
         11 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

         52 GAAAGCAAGC


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:9280 original size:6 final size:6

Alignment explanation


    Indices: 9269--9293  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       9259 AGCAAACCTC

                                         
       9269 TGGCCT TGGCCT TGGCCT TGGCCT T
          1 TGGCCT TGGCCT TGGCCT TGGCCT T

       9294 ACCTTACCCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.32, G:0.32, T:0.36


Consensus pattern (6 bp):   
TGGCCT

Done.