Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008296.1 Corchorus capsularis cultivar CVL-1 contig08317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82893

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1939--1988
3
16.0
3
87
8
57
60
0
2
38
1.09
1936--1995
14
4.4
14
76
19
72
56
0
1
41
1.09
2275--2311
2
18.5
2
100
0
74
51
0
0
48
1.00
10760--10792
12
2.8
12
86
13
50
6
48
0
45
1.27
12976--13122
76
1.9
76
91
2
242
43
12
8
34
1.74
16908--17009
52
2.0
51
86
1
141
24
10
18
46
1.81
28196--28220
2
12.5
2
100
0
50
52
0
0
48
1.00
44593--44630
2
19.0
2
100
0
76
50
0
0
50
1.00
72449--72487
20
2.0
20
85
5
53
69
10
12
7
1.37
73163--73240
29
2.7
28
79
15
95
39
28
14
17
1.89
73671--73748
29
2.6
30
76
15
90
16
14
29
39
1.88

Tables:   1

The End!