genome.fa.s8299.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008299.1 Corchorus capsularis cultivar CVL-1 contig08320, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93240

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6222--6312	43	2.1	43	93	0	164	28	12	14	45	1.80
7532--7569	18	2.1	19	90	5	60	52	0	15	31	1.43
10526--10559	16	2.1	17	88	5	52	67	23	0	8	1.18
11112--11146	2	17.5	2	100	0	70	51	0	48	0	1.00
14295--14319	13	1.9	13	100	0	50	56	0	0	44	0.99
14540--14588	25	2.0	25	91	0	80	40	0	0	59	0.98
29690--29722	17	1.9	17	93	0	57	30	6	21	42	1.77
30834--30997	84	2.0	84	90	2	258	33	10	21	34	1.87
34825--34967	38	3.5	38	71	16	133	19	11	11	56	1.66
34825--35076	85	2.8	85	86	7	335	20	12	11	55	1.67
34919--35076	48	3.3	47	82	8	212	21	13	10	53	1.70
34919--35098	48	3.8	48	82	8	197	20	13	11	55	1.68
35546--35624	37	2.2	37	88	2	115	30	10	13	45	1.77
48260--48556	135	2.2	134	86	5	411	28	26	23	20	1.99
53936--54136	100	2.0	100	99	0	393	32	17	19	30	1.95
65272--65426	55	2.8	55	94	2	256	16	26	25	30	1.97
65272--65437	57	2.9	57	88	3	239	18	25	25	30	1.98
65444--65565	61	2.0	61	86	0	172	27	17	25	30	1.97
67872--68000	42	3.2	42	60	16	99	24	11	12	51	1.72
67853--68002	80	1.9	80	100	0	300	24	12	12	50	1.75
69193--69322	32	4.1	31	84	4	170	22	20	26	30	1.98
69189--69323	64	2.1	64	88	0	198	21	20	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69706--69744	6	6.5	6	90	0	60	17	53	12	15	1.72
70875--70909	17	2.1	17	94	0	61	54	17	8	20	1.68
74389--74996	124	4.9	124	89	1	871	38	14	14	33	1.86
75639--75746	57	1.9	57	86	7	157	30	22	21	25	1.98
76525--76562	19	2.1	18	90	5	58	55	0	7	36	1.29
77037--77069	2	17.0	2	93	6	59	48	0	0	51	1.00
81247--81676	194	2.2	194	85	3	587	34	19	17	27	1.95
82337--82486	44	3.4	44	80	5	144	53	0	8	37	1.37
86802--86877	21	3.3	21	67	19	62	50	7	19	22	1.73
86791--86988	48	4.0	48	84	10	222	51	5	19	24	1.68
86818--87011	53	3.7	53	87	6	238	50	5	18	25	1.67
86872--87191	55	5.8	55	73	18	190	49	6	17	26	1.71
86872--87133	55	4.6	58	77	12	226	49	5	18	26	1.70
87020--87166	49	2.9	48	75	17	136	48	8	17	24	1.75
86850--87221	168	2.2	168	82	7	450	48	6	18	26	1.72
87162--87270	37	3.0	38	74	20	133	48	7	16	27	1.72
87138--87270	71	1.9	71	92	3	223	48	9	15	27	1.75
87207--87256	15	3.1	15	74	20	55	48	6	16	30	1.70
87138--87256	34	3.4	34	77	15	134	48	8	15	27	1.73
87615--87732	22	5.4	21	76	20	68	53	7	16	22	1.68
92384--92727	35	9.8	35	88	3	446	33	18	9	38	1.83
92384--92727	71	4.9	70	87	4	419	33	18	9	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92384--92727	106	3.3	106	88	4	475	33	18	9	38	1.83

Tables:   1

The End!