genome.fa.s8306.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008306.1 Corchorus capsularis cultivar CVL-1 contig08327, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74711

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2267--2292	10	2.6	10	100	0	52	0	23	50	26	1.50
3329--3425	33	2.9	33	86	3	124	19	39	29	11	1.87
3387--3496	23	4.8	23	91	5	145	18	43	27	10	1.83
3443--3484	13	3.5	13	75	18	54	19	42	26	11	1.85
8987--9021	16	2.2	16	89	0	52	28	2	31	37	1.72
10460--10523	10	6.5	10	72	16	62	73	0	0	26	0.84
10471--10510	18	2.2	18	86	0	53	72	0	0	27	0.85
10461--10521	29	2.1	29	87	3	88	72	0	0	27	0.85
10460--10523	11	6.4	11	72	18	59	73	0	0	26	0.84
21825--21899	30	2.5	31	80	6	91	12	29	30	28	1.92
28423--28541	36	3.4	36	76	15	133	27	16	7	47	1.74
28444--28556	32	3.4	32	75	16	113	27	18	6	47	1.72
28540--28961	35	11.9	35	80	8	401	26	19	9	44	1.82
28555--28954	71	5.7	70	82	6	431	26	19	10	43	1.82
28555--28954	175	2.3	175	83	5	481	26	19	10	43	1.82
29053--29192	36	3.9	36	93	0	228	27	11	12	48	1.75
28992--29188	72	2.7	71	83	6	193	27	12	12	47	1.78
29193--29270	12	6.7	12	88	8	117	8	25	7	57	1.56
29193--29269	23	3.3	23	86	13	113	9	25	7	57	1.57
29193--29269	35	2.2	35	93	4	129	9	25	7	57	1.57
34568--34604	8	4.5	8	86	6	56	27	2	16	54	1.56
36555--36623	28	2.5	28	92	0	111	15	28	26	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40547--40653	33	3.2	33	84	2	135	23	38	28	9	1.86
51520--51568	26	1.9	25	83	4	62	18	20	12	48	1.79
56848--56889	18	2.3	18	95	0	75	38	14	4	42	1.66
60670--60707	18	2.1	19	90	5	60	18	39	13	28	1.88
66337--66370	6	5.7	6	100	0	68	0	0	14	85	0.60
73906--73939	16	2.2	16	89	5	52	29	2	8	58	1.43

Tables:   1

The End!