Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008307.1 Corchorus capsularis cultivar CVL-1 contig08328, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26716

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50--341
22
13.6
21
71
13
175
18
19
6
55
1.64
50--286
42
5.5
42
80
6
210
18
19
6
55
1.64
173--229
14
4.2
13
73
10
51
19
19
1
59
1.46
562--648
26
3.2
26
64
20
70
25
17
6
50
1.70
525--692
55
3.1
55
92
1
275
25
18
7
49
1.72
1153--1200
24
2.0
25
84
12
64
66
18
6
8
1.39
1328--1525
51
3.9
50
79
8
154
37
15
6
40
1.72
1378--1521
50
2.8
51
83
5
193
37
16
4
41
1.68
1364--1534
51
3.4
50
80
6
220
37
16
5
40
1.71
13455--13521
33
2.0
33
97
0
125
31
0
22
46
1.52
13521--13553
7
4.9
7
92
3
50
42
0
0
57
0.98
14822--14864
13
3.2
13
84
15
52
32
0
6
60
1.23
16279--16329
21
2.4
22
77
9
61
17
33
27
21
1.96
17686--17716
12
2.6
12
89
0
53
6
32
41
19
1.77
17669--17752
42
2.0
42
90
0
132
5
26
44
23
1.76
20911--20990
42
1.9
42
87
5
117
5
26
43
25
1.74
21329--22078
165
4.5
165
80
5
728
30
12
24
31
1.93
21329--22296
165
5.8
165
77
7
724
30
12
24
32
1.93
22976--23052
38
2.0
38
100
0
154
35
18
12
33
1.89
25261--25341
39
2.1
39
100
0
162
14
19
19
45
1.85

Tables:   1

The End!