genome.fa.s8311.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008311.1 Corchorus capsularis cultivar CVL-1 contig08332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58860

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13--89	2	38.0	2	94	2	91	49	7	1	41	1.40
657--748	45	2.0	45	100	0	184	41	16	8	33	1.79
1890--2400	49	10.7	49	82	6	491	33	15	27	23	1.95
1890--2400	98	5.3	96	79	10	544	33	15	27	23	1.95
2135--2304	87	1.9	88	85	1	234	31	13	30	24	1.94
2089--2353	136	1.9	137	86	5	376	33	14	29	23	1.94
2401--2709	126	2.5	127	83	6	380	38	19	26	15	1.91
2402--2730	40	7.9	40	73	12	236	38	18	27	14	1.90
2531--2700	87	2.0	86	85	3	234	38	19	28	14	1.90
3323--3512	51	3.8	50	78	9	145	34	17	5	41	1.74
3587--3649	32	2.0	32	84	6	83	46	12	1	39	1.52
3671--3710	20	2.0	20	90	5	62	37	12	5	45	1.64
3594--3770	51	3.5	51	82	6	198	42	15	2	39	1.61
3596--3780	102	1.8	101	83	8	248	42	15	2	40	1.61
4549--5090	49	11.5	49	81	10	585	33	16	27	23	1.96
4644--4717	38	1.9	38	91	0	121	27	17	31	24	1.97
4595--4865	87	3.0	87	80	10	292	33	16	27	22	1.95
4568--4816	136	1.8	136	91	1	410	34	14	27	23	1.94
4837--5001	87	1.9	87	86	2	233	33	15	27	23	1.95
4549--5108	234	2.4	233	86	3	770	34	16	26	22	1.95
4788--5050	136	1.9	136	86	3	368	34	15	27	22	1.95
5100--5405	40	7.4	40	72	13	221	39	20	24	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4549--5172	234	2.7	234	81	6	615	34	16	26	21	1.95
5100--5405	126	2.5	122	80	7	316	39	20	24	15	1.91
6017--6206	51	3.8	50	78	9	145	34	17	5	41	1.74
7364--7407	22	2.0	22	100	0	88	40	9	18	31	1.81
8811--8843	8	4.2	8	84	7	50	3	12	0	84	0.72
8813--8842	15	2.1	14	93	6	51	3	6	0	90	0.56
8933--8976	20	2.2	20	84	8	54	36	9	6	47	1.62
13272--13684	35	11.8	35	92	0	666	39	10	17	33	1.83
15058--15700	49	13.6	49	81	9	710	34	15	27	22	1.94
15343--15418	38	2.0	38	97	0	143	27	18	30	23	1.98
15196--15710	186	2.8	185	87	2	739	35	15	26	22	1.94
15293--15653	87	4.0	87	82	8	470	34	15	28	21	1.94
15243--15653	137	3.0	135	80	12	457	34	15	27	21	1.94
15530--15605	38	2.0	38	89	0	116	30	15	31	22	1.95
15444--15700	136	1.9	136	89	2	399	35	12	28	23	1.92
15702--16097	40	9.4	40	73	13	307	39	19	26	14	1.90
15749--16075	46	7.7	44	73	15	149	38	20	26	14	1.91
15706--15942	85	2.8	83	88	4	330	38	19	27	15	1.91
15749--16097	126	2.7	128	78	11	358	38	20	26	14	1.91
16687--16950	51	5.3	50	77	5	169	33	18	4	43	1.71
18203--18312	32	3.4	32	86	2	141	32	34	20	12	1.90
18195--18313	16	7.4	16	73	7	98	32	34	20	12	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19096--19231	16	8.6	16	70	4	69	30	36	22	11	1.90
19144--19231	32	2.8	31	80	3	95	30	31	22	14	1.94
20751--20786	2	18.0	2	100	0	72	50	0	0	50	1.00
21779--21821	21	2.0	21	91	8	70	51	25	13	9	1.71
22315--22559	126	2.0	119	88	5	364	43	2	32	21	1.67
22766--22839	30	2.4	31	82	6	80	39	18	13	28	1.89
31072--31134	23	2.7	23	83	11	76	9	26	46	17	1.79
31094--31192	33	3.0	32	86	4	135	9	29	40	21	1.84
36431--36473	9	4.7	9	94	2	68	13	0	2	83	0.74
37458--37598	33	4.3	34	82	6	123	8	26	42	22	1.82
37809--37986	96	1.9	96	91	0	293	17	35	13	33	1.89
38836--38865	2	15.0	2	92	0	51	53	0	0	46	1.00
44159--44242	29	2.8	30	78	8	82	20	21	14	44	1.86
44280--44331	13	3.6	13	72	22	50	13	25	30	30	1.94
44280--44354	32	2.4	32	88	2	116	14	25	29	30	1.95
46211--46241	2	15.5	2	100	0	62	51	0	0	48	1.00
52599--52883	107	2.7	105	90	2	439	42	7	9	40	1.66
53553--53591	6	6.5	6	90	0	51	12	5	69	12	1.35
53552--53586	18	1.9	18	94	0	61	14	8	68	8	1.38
53699--53768	27	2.6	27	86	6	88	15	14	21	48	1.80
57548--57851	38	8.1	38	90	2	445	49	7	16	25	1.73
57946--58022	33	2.3	33	86	2	100	55	3	14	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58298--58337	19	2.1	19	85	0	53	55	0	22	22	1.44
58384--58437	16	3.3	16	74	5	54	50	5	18	25	1.69

Tables:   1

The End!