Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008312.1 Corchorus capsularis cultivar CVL-1 contig08333, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47405

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4226--4353
44
2.9
43
83
2
157
37
7
11
42
1.70
4251--4353
43
2.4
44
86
1
136
37
8
10
42
1.71
4229--4354
22
5.8
22
75
7
114
38
7
11
42
1.70
4590--4653
21
3.1
21
77
8
87
37
10
20
31
1.87
4920--4953
2
17.0
2
100
0
68
50
0
0
50
1.00
5721--6014
151
1.9
152
91
0
482
39
18
8
32
1.81
11880--11931
19
2.8
18
82
5
68
36
40
15
7
1.76
12077--12188
16
7.0
16
74
10
86
50
29
12
7
1.66
12077--12188
32
3.5
32
79
6
120
50
29
12
7
1.66
12077--12188
48
2.3
47
80
6
143
50
29
12
7
1.66
12343--12404
15
3.9
16
76
17
67
38
35
8
17
1.80
12326--12402
32
2.4
32
93
0
127
40
36
9
14
1.77
13327--13376
25
2.0
25
92
0
82
38
6
8
48
1.57
18492--18541
25
2.0
25
88
0
73
36
6
10
48
1.61
21421--21483
24
2.7
24
87
7
85
42
23
15
17
1.88
23944--23969
10
2.6
10
100
0
52
30
7
23
38
1.83
24716--24776
20
2.9
21
73
14
63
49
1
6
42
1.38
32659--32689
4
7.8
4
100
0
62
22
0
0
77
0.77
39827--40040
109
2.0
109
96
0
392
31
14
9
43
1.79

Tables:   1

The End!