Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008313.1 Corchorus capsularis cultivar CVL-1 contig08334, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38228

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
239--272
16
2.2
16
89
5
52
58
8
2
29
1.43
8796--8823
13
2.2
13
100
0
56
42
28
14
14
1.84
14128--14169
11
3.7
11
84
15
59
42
0
2
54
1.13
14122--14169
23
2.1
23
81
11
55
45
2
2
50
1.25
14557--14620
33
1.9
33
93
0
110
35
17
4
42
1.70
15145--15177
16
2.1
16
100
0
66
51
18
6
24
1.68
22226--22251
2
13.0
2
100
0
52
50
0
0
50
1.00
27593--27630
19
2.0
19
90
10
60
52
10
10
26
1.68
27649--27789
37
3.7
37
82
6
151
48
10
14
26
1.75
27827--27974
36
4.2
36
79
4
149
45
9
20
24
1.81
27835--27971
70
1.9
71
89
4
215
45
8
20
24
1.79
27987--28067
41
2.0
42
90
2
128
45
12
20
20
1.83
28050--28153
36
2.9
36
94
1
183
48
12
12
26
1.77
28226--28337
11
10.1
11
90
1
161
55
8
25
10
1.63
28330--28560
36
6.7
36
83
6
257
42
10
22
23
1.84
28522--28593
37
2.0
35
82
17
85
50
6
20
22
1.72
28564--28670
32
3.2
32
77
14
126
46
5
18
28
1.72
28574--28692
36
3.4
35
77
13
138
47
7
17
27
1.75
28564--28692
68
1.9
68
87
3
188
47
6
17
27
1.74
33265--33297
17
1.9
17
93
0
57
30
18
6
45
1.73
34033--34087
24
2.2
25
83
6
67
40
3
10
45
1.57
37858--37900
21
2.0
22
86
4
61
18
37
9
34
1.83

Tables:   1

The End!