Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008314.1 Corchorus capsularis cultivar CVL-1 contig08335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96657

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2748--2785
17
2.2
17
90
0
58
50
2
34
13
1.55
3050--3118
29
2.3
31
77
5
79
27
8
23
40
1.84
5988--6037
6
8.7
6
80
6
50
26
50
20
4
1.66
6272--6339
35
1.9
35
87
3
100
54
8
14
22
1.67
6720--6773
26
2.3
23
84
15
74
35
0
7
57
1.27
6771--6808
3
12.3
3
94
5
67
65
0
0
34
0.93
8467--8536
16
4.4
16
74
3
52
37
42
15
4
1.67
8659--8733
37
2.0
38
94
2
134
14
24
6
54
1.64
30914--30946
2
17.0
2
87
6
50
51
0
3
45
1.16
33961--34009
26
1.9
25
83
4
62
48
12
20
18
1.79
46604--46656
27
2.0
27
92
0
88
47
11
3
37
1.58
57759--57990
22
10.8
22
66
18
69
35
14
9
41
1.77
57723--57851
62
2.1
62
94
0
222
34
11
10
44
1.74
57723--57867
62
2.3
62
88
2
175
35
11
9
42
1.74
58071--58175
45
2.3
45
80
7
115
38
16
8
37
1.79
58069--58365
22
13.6
21
71
12
158
36
15
8
40
1.78
58465--58591
22
5.8
22
74
9
73
33
12
10
44
1.76
58467--58605
44
3.2
44
72
6
120
31
12
11
43
1.79
58487--58605
22
5.4
22
74
7
80
31
12
11
44
1.78
58659--58754
38
2.6
37
80
3
120
54
12
18
14
1.71
58953--59048
38
2.6
37
80
3
120
54
12
18
14
1.71
58534--59091
294
1.9
294
99
0
1107
41
13
13
30
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59171--59235
31
2.1
31
88
2
96
46
6
20
27
1.74
61439--61472
2
17.0
2
93
0
59
52
0
0
47
1.00
61647--61712
23
2.7
26
81
9
84
50
12
7
30
1.67
64510--64566
24
2.4
24
81
18
66
66
5
1
26
1.22
65176--65233
29
2.1
28
93
6
100
20
17
15
46
1.84
66434--66468
11
3.2
11
83
0
52
77
17
5
0
0.96
67674--67725
27
1.9
27
88
0
77
36
17
21
25
1.94
69016--69047
2
16.0
2
100
0
64
50
0
0
50
1.00
70635--70684
13
4.2
12
78
14
50
72
0
28
0
0.86
74574--74671
48
2.0
48
94
0
169
31
15
27
25
1.95
80668--80698
4
7.5
4
92
7
53
70
25
0
3
1.02
80668--80700
12
2.6
13
90
9
59
69
24
0
6
1.10
84481--84587
35
3.1
35
90
0
178
36
1
14
46
1.56
86786--86857
16
4.6
16
81
10
94
6
16
38
37
1.76
86786--86886
16
6.7
15
75
19
86
5
16
41
35
1.73
87639--87680
16
2.7
15
85
10
57
2
14
42
40
1.58
87619--87690
6
11.8
6
73
24
53
2
18
45
33
1.63
89568--89592
12
2.1
12
100
0
50
24
36
8
32
1.84
95779--95836
21
2.9
19
79
5
62
29
18
12
39
1.87
96051--96657
201
3.0
200
89
0
926
33
12
19
34
1.90

Tables:   1

The End!