Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008315.1 Corchorus capsularis cultivar CVL-1 contig08336, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20941

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--476
194
2.4
196
83
5
586
35
13
16
34
1.89
3026--3064
12
3.2
12
92
0
60
25
25
20
28
1.99
7013--7044
17
1.9
16
93
6
55
53
0
0
46
1.00
7182--7226
16
2.9
15
87
12
65
22
4
6
66
1.33
7190--7249
14
4.0
16
72
24
67
23
6
8
61
1.48
7366--8012
22
29.9
22
67
12
209
36
15
9
38
1.80
7667--7730
23
2.8
23
82
0
83
37
20
6
35
1.78
7652--7758
45
2.4
45
78
9
110
35
15
9
39
1.80
7635--7887
128
2.0
126
80
3
283
35
16
7
40
1.77
8052--8427
22
16.9
22
70
13
216
33
17
9
39
1.82
8030--8198
44
3.8
44
76
7
155
33
14
9
42
1.78
8050--8268
111
2.0
110
81
12
261
33
16
9
41
1.80
8458--8520
21
2.9
20
73
15
54
42
19
7
30
1.79
8762--8799
20
1.9
19
85
15
51
63
0
5
31
1.17
9418--9483
31
2.1
31
86
5
89
45
3
19
31
1.66
10108--10137
16
1.9
15
93
6
51
66
0
0
33
0.92
11099--11144
24
2.0
24
83
12
60
23
0
2
73
0.94
11542--11787
81
3.0
81
95
1
431
22
30
13
33
1.92
12422--12502
36
2.2
36
88
0
117
16
29
23
30
1.96
18406--18435
16
1.9
15
93
6
51
76
0
6
16
0.99
18943--18971
6
4.8
6
100
0
58
34
0
0
65
0.93
20006--20085
25
3.1
25
67
13
72
53
17
6
22
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20907--20941
2
17.5
2
100
0
70
51
0
0
48
1.00

Tables:   1

The End!