Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008318.1 Corchorus capsularis cultivar CVL-1 contig08339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31034

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3187--3228
22
1.9
22
90
0
66
45
11
28
14
1.80
3432--3494
15
4.5
13
74
18
54
53
0
6
39
1.26
3432--3502
29
2.5
28
80
11
65
54
0
7
38
1.27
3442--3502
15
4.3
14
78
15
63
57
0
8
34
1.29
3884--3924
20
2.0
20
95
0
73
48
9
24
17
1.76
4244--4303
29
2.0
30
93
3
104
36
5
21
36
1.76
5277--5305
13
2.2
13
100
0
58
37
13
0
48
1.43
5429--5459
13
2.4
13
100
0
62
54
0
0
45
0.99
8676--8749
37
2.0
37
94
2
132
27
27
1
44
1.62
14508--14562
27
2.0
27
100
0
110
34
3
14
47
1.62
16627--16806
60
3.0
60
94
1
308
25
25
21
27
1.99
17720--17744
12
2.1
12
100
0
50
16
36
8
40
1.77

Tables:   1

The End!