Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008319.1 Corchorus capsularis cultivar CVL-1 contig08340, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13007
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32


Found at i:1924 original size:16 final size:16

Alignment explanation


    Indices: 1883--1927  Score: 56
    Period size: 15  Copynumber: 2.9  Consensus size: 16

       1873 TCGGATTTTG

                          **
       1883 TCGGTTTCGGGTTATC
          1 TCGGTTTCGGGTTAAA

                *           
       1899 TC-GATTCGGGTTAAA
          1 TCGGTTTCGGGTTAAA

                          
       1914 TCGGTTTCGGGTTA
          1 TCGGTTTCGGGTTA

       1928 TAGTTATTAT


Statistics
Matches: 24,  Mismatches: 4, Indels: 2
        0.80            0.13        0.07

Matches are distributed among these distances:
  15   12  0.50
  16   12  0.50

ACGTcount: A:0.13, C:0.16, G:0.31, T:0.40


Consensus pattern (16 bp):   
TCGGTTTCGGGTTAAA
Done.