Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008320.1 Corchorus capsularis cultivar CVL-1 contig08341, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5199
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:4522 original size:15 final size:16

Alignment explanation


    Indices: 4490--4523  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       4480 AAAGAAGAAT

                 *          
       4490 TAAAATTAAATCTAAC
          1 TAAAAGTAAATCTAAC

                            
       4506 TAAAAGTAAAT-TAAC
          1 TAAAAGTAAATCTAAC

               
       4521 TAA
          1 TAA

       4524 GAAAGCAATC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.59, C:0.09, G:0.03, T:0.29


Consensus pattern (16 bp):   
TAAAAGTAAATCTAAC
Done.