Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008322.1 Corchorus capsularis cultivar CVL-1 contig08343, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42839

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6703--6764
22
2.8
22
97
0
115
25
22
24
27
2.00
15207--15251
22
2.0
22
95
0
81
13
6
44
35
1.70
15294--15384
46
2.0
45
93
4
157
27
20
24
27
1.99
22921--23002
22
3.7
22
75
6
85
45
9
13
31
1.76
23027--23082
22
2.5
22
88
2
76
37
7
19
35
1.79
23023--23100
22
3.5
22
84
7
68
38
6
20
34
1.78
23247--23391
22
6.6
22
78
0
137
35
11
15
37
1.82
23136--23390
44
5.8
44
72
9
148
34
10
16
39
1.82
23136--23368
66
3.6
63
73
12
163
33
10
16
39
1.82
23265--23390
66
1.9
67
88
1
191
34
10
17
38
1.84
23247--23391
44
3.3
44
81
1
175
35
11
15
37
1.82
23521--23828
154
2.0
154
99
0
607
33
18
18
29
1.95
28297--28341
22
2.1
22
84
8
58
17
37
20
24
1.93
35605--35711
31
3.5
31
86
0
160
30
21
25
22
1.99
36300--36329
13
2.3
13
100
0
60
30
6
20
43
1.77
38654--38693
2
20.5
2
89
5
64
52
0
0
47
1.00
39728--39758
12
2.7
12
95
5
55
0
16
0
83
0.64
42535--42586
26
2.0
26
100
0
104
34
11
7
46
1.69
42807--42839
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!