Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008327.1 Corchorus capsularis cultivar CVL-1 contig08348, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82438

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
208--241
2
17.0
2
100
0
68
50
0
0
50
1.00
1547--1593
22
2.1
23
84
11
62
44
23
12
19
1.85
2885--3097
106
2.0
106
98
0
408
35
15
15
33
1.89
3874--3903
14
2.1
14
93
0
51
36
10
6
46
1.64
4941--4976
2
18.0
2
94
0
63
47
0
2
50
1.15
7182--7211
7
4.4
7
95
4
53
56
0
0
43
0.99
28183--28217
2
17.5
2
100
0
70
51
0
0
48
1.00
31357--31414
29
1.9
31
82
10
75
29
13
5
51
1.63
31600--31637
19
2.0
20
85
15
53
28
5
2
63
1.30
31846--31963
44
2.6
45
82
14
145
33
11
16
37
1.86
31802--31985
22
8.3
22
71
5
102
32
9
19
38
1.85
32206--32417
22
9.5
22
74
7
119
41
9
13
35
1.76
32249--32415
44
3.8
44
76
6
142
42
10
12
34
1.77
32243--32371
66
2.0
66
81
3
152
41
9
13
35
1.76
32496--32546
20
2.6
20
93
3
86
43
11
17
27
1.84
32496--32788
22
13.5
22
72
10
160
39
9
15
34
1.81
32684--32786
23
4.6
23
82
3
102
36
9
14
38
1.79
32515--32788
44
6.3
45
74
11
223
39
9
15
35
1.80
32731--32808
22
3.5
23
81
11
74
35
12
14
37
1.84
34280--34580
22
13.3
22
67
17
138
40
10
14
34
1.80
34280--34580
44
6.7
44
69
15
159
40
10
14
34
1.80
34280--34486
66
3.1
66
82
5
215
40
9
14
35
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34631--34679
22
2.2
22
85
0
62
38
6
16
38
1.73
34646--34928
22
12.5
22
73
12
146
37
11
13
38
1.81
34968--35059
46
2.0
46
82
4
114
32
10
13
43
1.78
35019--35641
22
28.7
22
69
7
281
37
11
16
35
1.84
35591--35641
21
2.4
22
83
9
61
41
9
13
35
1.78
36193--36390
104
1.9
104
88
3
299
28
9
22
39
1.84
36352--36775
22
19.5
21
71
16
194
37
9
15
37
1.81
36193--36390
105
1.9
105
88
3
301
28
9
22
39
1.84
36360--36775
44
9.6
43
71
17
224
37
9
15
37
1.80
36352--36760
66
6.3
64
73
17
240
36
10
15
37
1.81
36587--37052
22
20.6
22
68
15
168
37
9
15
37
1.79
36742--36792
23
2.3
22
79
3
57
39
7
13
39
1.74
43608--43771
80
2.0
81
94
2
285
38
3
15
43
1.62
49059--49095
2
18.5
2
94
0
65
54
45
0
0
1.00
55203--55301
51
1.9
51
100
0
198
22
19
21
37
1.94
57033--57089
30
1.9
30
85
7
80
31
17
28
22
1.97
57634--57706
16
4.6
16
71
10
69
45
38
9
6
1.64
59026--59082
15
3.6
15
75
17
53
40
36
15
7
1.75
61349--61377
6
5.0
6
95
4
51
0
13
0
86
0.58
61776--61814
21
1.9
20
89
5
60
43
5
5
46
1.48
63263--63334
27
2.7
28
73
16
71
62
1
33
2
1.18
64149--64240
45
2.1
44
92
6
152
38
20
5
35
1.76

Tables:   1

The End!