Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008329.1 Corchorus capsularis cultivar CVL-1 contig08350, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4360
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31


Found at i:495 original size:2 final size:2

Alignment explanation


    Indices: 488--524  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

        478 CATCACATCG

                                                                   
        488 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        525 GACACACATG


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:3671 original size:12 final size:12

Alignment explanation


    Indices: 3656--3685  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       3646 GCATGCGATG

                        
       3656 GCCGGTCATGTC
          1 GCCGGTCATGTC

                       *
       3668 GCCGGTCATGTG
          1 GCCGGTCATGTC

                  
       3680 GCCGGT
          1 GCCGGT

       3686 GTTGCGCGGC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.07, C:0.30, G:0.40, T:0.23


Consensus pattern (12 bp):   
GCCGGTCATGTC
Done.