Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008334.1 Corchorus capsularis cultivar CVL-1 contig08355, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80522

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7609--7649
7
5.9
7
91
0
55
26
26
4
41
1.76
16574--16630
27
2.1
27
90
0
87
19
36
21
22
1.95
16977--17001
13
1.9
13
100
0
50
68
0
8
24
1.16
28579--28738
75
2.1
75
91
0
257
20
14
34
30
1.92
32080--32108
2
14.5
2
100
0
58
51
0
0
48
1.00
37905--37972
23
3.0
23
82
4
84
16
20
19
44
1.87
39738--39775
11
3.5
11
85
10
51
57
2
0
39
1.12
39993--40027
16
2.2
16
89
0
52
11
25
5
57
1.56
40723--40754
6
5.3
6
92
0
55
18
34
28
18
1.95
55411--55464
28
1.9
28
96
0
99
22
24
16
37
1.94
55611--55764
83
1.9
83
95
0
281
38
11
10
39
1.75
57912--57966
28
2.0
28
100
0
110
49
21
10
18
1.78
58840--58911
30
2.3
30
83
11
92
44
2
0
52
1.15
58853--58925
19
4.2
18
77
14
66
45
1
0
53
1.09
64083--64202
61
2.0
60
95
1
213
35
12
15
36
1.85
64139--64282
72
2.0
72
94
0
252
36
11
13
38
1.80
64256--64320
30
2.1
31
88
2
96
27
16
4
50
1.65
64262--64327
30
2.1
31
86
5
89
31
13
4
50
1.62
64348--64395
15
3.5
15
67
21
50
35
8
0
56
1.30
66011--66524
22
22.9
22
67
15
146
39
9
15
35
1.80
66579--67072
22
22.7
22
68
13
170
37
8
16
37
1.80
66606--66855
66
3.9
67
74
11
227
41
8
14
36
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66794--66863
23
3.0
23
87
0
104
37
7
17
38
1.77
67447--67536
38
2.4
37
83
3
117
14
20
11
54
1.70
67600--67743
22
6.6
22
70
13
84
43
12
11
31
1.79
67844--68475
22
28.7
22
65
15
126
40
10
14
35
1.79
68383--68534
62
2.5
62
88
0
214
43
9
10
36
1.72
68382--68490
22
5.2
20
68
16
69
44
10
11
33
1.75
69881--69914
2
17.0
2
100
0
68
50
0
0
50
1.00
72884--72923
17
2.4
17
87
8
55
25
22
17
35
1.95
73958--74010
27
2.0
27
85
7
74
39
9
1
49
1.46
74648--74700
26
2.1
24
86
6
70
32
3
0
64
1.12
75388--75414
12
2.2
12
100
0
54
0
22
59
18
1.38
80480--80522
2
21.5
2
100
0
86
48
0
0
51
1.00

Tables:   1

The End!