Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008335.1 Corchorus capsularis cultivar CVL-1 contig08356, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93984

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20409--20467
31
1.9
31
93
6
102
23
23
25
27
2.00
21359--21383
2
12.5
2
100
0
50
52
0
48
0
1.00
30355--30409
24
2.3
23
75
3
56
5
41
9
43
1.59
34381--34414
12
2.8
12
86
4
50
23
5
2
67
1.26
40502--40570
27
2.6
27
95
0
129
50
7
20
21
1.72
47807--47977
91
1.9
89
93
2
297
28
16
19
35
1.94
56112--56136
7
3.6
7
100
0
50
16
28
24
32
1.96
57470--57495
7
3.7
7
100
0
52
42
26
15
15
1.87
58673--58712
14
2.9
14
76
0
53
35
10
40
15
1.80
66523--66756
101
2.3
106
83
6
293
44
8
7
40
1.63
67025--67062
17
2.4
15
91
8
58
0
15
2
81
0.80
67297--67352
17
2.9
19
76
15
62
28
21
12
37
1.90
67446--67530
42
2.0
42
100
0
170
50
14
14
21
1.77
85233--85287
15
3.6
15
76
11
58
54
0
0
45
0.99
85236--85290
9
5.4
11
75
25
50
56
0
0
43
0.99
85262--85305
17
2.7
16
86
13
63
59
0
0
40
0.98
93637--93707
29
2.4
29
83
0
88
38
26
12
22
1.90

Tables:   1

The End!