genome.fa.s8340.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008340.1 Corchorus capsularis cultivar CVL-1 contig08361, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60522

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70--214	33	4.4	32	85	12	163	11	42	34	11	1.78
87--214	66	1.9	66	88	3	195	12	43	32	11	1.79
277--370	33	2.9	33	90	3	138	11	30	42	14	1.82
1248--1284	18	2.1	18	89	0	56	35	29	5	29	1.80
7916--8123	103	2.0	103	97	0	389	37	8	20	33	1.83
13810--13936	51	2.5	51	100	0	254	30	26	25	16	1.97
17380--17418	20	1.9	21	94	5	71	58	7	0	33	1.26
17425--17581	74	2.1	74	91	2	253	40	8	28	22	1.84
18797--18840	19	2.1	21	84	12	56	22	9	11	56	1.62
22010--22056	22	2.1	22	92	0	76	42	4	4	48	1.42
22010--22052	11	3.9	11	87	0	59	41	4	4	48	1.44
22219--22265	22	2.1	22	96	0	85	42	4	6	46	1.48
22219--22261	11	3.9	11	90	0	68	41	4	6	46	1.51
21993--22415	209	2.0	209	96	0	783	39	6	18	35	1.76
39175--39199	12	2.1	12	100	0	50	20	0	0	80	0.72
44670--44705	19	2.0	19	89	10	58	33	0	0	66	0.92
51989--52031	14	3.1	13	80	12	50	30	2	0	67	1.03
52073--52132	19	3.1	19	80	4	66	41	1	41	15	1.56
52087--52199	20	5.3	20	71	18	86	42	3	41	12	1.59
52073--52204	67	2.0	66	95	1	237	42	3	39	14	1.64
55774--55808	18	1.9	18	94	0	61	60	0	40	0	0.97
57279--57393	58	2.0	58	89	0	176	43	14	7	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58463--58788	162	2.0	162	95	0	591	48	10	10	30	1.70
58890--58955	31	2.1	32	91	5	109	30	18	4	46	1.68
58890--58967	31	2.6	29	86	10	77	30	17	5	46	1.70
59004--59045	16	2.7	16	88	3	59	38	19	0	42	1.51
59068--59132	30	2.1	32	91	5	107	33	13	3	49	1.58
59074--59140	31	2.2	31	89	5	100	37	11	4	46	1.61
59235--59324	37	2.4	36	80	5	117	14	21	11	53	1.71
59378--59438	22	2.8	22	79	13	65	45	13	4	36	1.64
59451--59501	22	2.4	22	86	3	68	43	5	13	37	1.69
59627--59879	22	11.7	22	71	17	118	39	9	14	37	1.78
59795--60037	22	10.9	23	69	13	73	34	9	16	38	1.82
60132--60283	62	2.5	62	96	0	277	42	9	13	33	1.78
60187--60283	22	4.6	22	66	14	69	41	10	12	36	1.77

Tables:   1

The End!