genome.fa.s8346.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008346.1 Corchorus capsularis cultivar CVL-1 contig08367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60620

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653--708	23	2.4	23	85	5	69	5	19	42	32	1.74
3757--3790	11	3.2	10	84	15	50	50	17	2	29	1.61
3921--3959	20	1.9	21	89	5	62	61	5	12	20	1.50
8058--8104	23	2.0	23	100	0	94	12	4	40	42	1.63
14693--14744	22	2.3	23	81	12	56	23	3	9	63	1.41
29417--29450	2	17.0	2	100	0	68	50	0	0	50	1.00
30200--30507	151	2.0	151	94	0	535	51	3	8	35	1.51
36476--36552	29	2.6	30	83	2	93	18	10	28	42	1.83
39820--39950	40	3.3	39	68	12	104	49	7	18	24	1.73
39802--39956	80	1.9	81	89	1	240	50	6	19	23	1.71
39909--40032	32	3.8	32	75	10	99	52	4	20	22	1.63
40209--40393	35	5.5	35	78	14	194	56	2	23	17	1.54
40182--40379	64	3.1	64	86	6	262	56	2	24	16	1.53
40182--40318	7	19.3	7	70	8	89	56	2	25	16	1.51
40307--40501	86	2.3	85	83	8	231	56	2	22	17	1.53
40310--40529	121	1.8	119	87	1	323	56	2	22	17	1.53
40389--40535	35	4.1	35	80	8	147	56	2	23	17	1.52
40489--40742	21	11.6	21	73	15	169	51	5	21	21	1.67
40496--40544	14	3.5	14	75	10	55	55	4	22	18	1.60
40553--40743	21	8.9	22	83	5	196	50	5	21	22	1.70
40524--40746	108	2.1	105	86	6	315	50	5	21	22	1.68
42505--42606	50	2.0	50	96	0	186	25	31	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43167--43293	62	2.0	62	98	0	245	31	28	14	25	1.95
52165--52242	37	2.1	39	87	4	115	38	17	10	33	1.84
54913--54977	30	2.1	31	85	2	87	29	20	3	47	1.65
57311--57361	27	1.9	26	84	11	68	33	23	11	31	1.91
58244--58278	17	2.1	17	89	5	54	20	5	5	68	1.31
59871--60620	198	3.8	198	84	4	960	34	18	12	34	1.88

Tables:   1

The End!