Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008348.1 Corchorus capsularis cultivar CVL-1 contig08369, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8883
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33


Found at i:2094 original size:5 final size:5

Alignment explanation


    Indices: 2080--2121  Score: 61
    Period size: 5  Copynumber: 8.8  Consensus size: 5

       2070 ATTGTTTTAA

                                                         *      
       2080 ATAT- ATATG ATATG ATATG ATATG ATATG ATAT- ATAAG ATAT
          1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATAT

       2122 AAGATAGTGA


Statistics
Matches: 34,  Mismatches: 2, Indels: 3
        0.87            0.05        0.08

Matches are distributed among these distances:
   4    7  0.21
   5   27  0.79

ACGTcount: A:0.45, C:0.00, G:0.14, T:0.40


Consensus pattern (5 bp):   
ATATG

Done.