Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008349.1 Corchorus capsularis cultivar CVL-1 contig08370, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33034

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2827--2987
60
2.6
61
82
8
177
39
14
16
28
1.89
2886--3022
31
4.4
31
77
10
154
40
16
17
25
1.89
3053--3214
31
5.4
30
68
14
100
27
20
17
33
1.96
3050--3213
60
2.7
60
88
0
247
27
20
18
33
1.96
4472--4724
128
2.0
128
85
4
350
41
9
18
30
1.83
19164--19209
15
3.0
16
68
12
51
28
19
15
36
1.92
23424--23481
12
4.9
12
79
12
59
77
0
13
8
0.98
23424--23469
11
4.2
11
86
8
58
80
0
10
8
0.91
23433--23473
19
2.2
19
90
0
64
80
0
12
7
0.90
26563--26723
83
1.9
83
89
0
250
38
17
16
27
1.91
27186--27246
29
2.1
29
90
0
95
32
16
19
31
1.94
27251--27343
33
2.8
33
90
0
141
29
20
19
31
1.97
27391--27463
33
2.2
33
90
2
112
47
2
26
23
1.65
28969--29014
6
7.5
6
83
11
58
0
2
15
82
0.76
28953--29010
26
2.4
25
83
13
70
0
5
15
79
0.90
28967--29015
18
2.8
17
85
14
64
0
2
18
79
0.83
32989--33033
2
22.5
2
100
0
90
48
0
0
51
1.00

Tables:   1

The End!