genome.fa.s8350.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008350.1 Corchorus capsularis cultivar CVL-1 contig08371, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36751

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8800--8825	2	13.0	2	100	0	52	50	0	0	50	1.00
11078--11126	22	2.2	23	79	17	59	28	16	4	51	1.63
13036--13080	22	2.0	22	91	0	72	40	15	11	33	1.83
13111--13233	22	5.6	22	69	11	81	35	14	8	41	1.76
13911--13986	22	3.5	21	81	15	66	35	9	7	47	1.65
13937--13986	22	2.3	22	89	3	84	38	10	6	46	1.62
14186--14240	22	2.5	23	85	11	80	40	16	3	40	1.66
14360--14547	22	8.3	22	72	8	108	37	18	9	35	1.83
14367--14544	44	3.9	44	78	9	121	37	16	10	36	1.82
14397--14544	44	3.3	44	80	3	154	35	14	11	37	1.83
14417--14548	66	2.0	66	83	2	167	35	16	11	36	1.85
14712--14749	19	2.0	20	85	15	53	63	2	5	28	1.30
15820--15909	45	2.0	45	93	0	153	34	20	21	24	1.96
16771--16849	38	2.1	38	81	9	90	58	8	18	13	1.62
16962--17027	31	2.1	32	86	5	91	45	4	19	30	1.70
17936--17984	15	3.5	15	81	13	61	75	0	0	24	0.80
19860--19891	16	1.9	17	93	6	57	56	0	0	43	0.99
20023--20055	16	1.9	17	88	11	50	0	18	0	81	0.68
22289--22347	12	4.8	12	76	15	59	52	10	1	35	1.45
22512--22541	13	2.3	13	94	0	51	60	20	6	13	1.55
23496--23539	3	14.7	3	86	9	63	27	0	0	72	0.85
23903--23936	17	1.9	18	88	5	52	58	26	0	14	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34191--34264	19	4.0	18	76	11	78	74	0	1	24	0.90
34191--34266	20	4.1	18	75	13	73	73	0	1	25	0.91
34211--34276	31	2.2	31	89	8	100	74	0	1	24	0.91
34202--34267	10	7.0	9	73	11	53	77	0	1	21	0.85
35184--35343	60	2.7	60	86	0	194	35	14	18	31	1.91
35244--35344	31	3.3	31	67	20	86	34	15	21	27	1.94
35230--35345	60	1.9	60	92	0	196	31	16	20	31	1.95
35378--35573	31	6.5	30	71	12	150	28	18	16	35	1.93
35411--35570	60	2.7	60	87	1	232	29	18	16	35	1.93
35437--35539	29	3.5	29	69	10	91	30	19	17	33	1.95
35378--35573	91	2.2	91	83	5	236	28	18	16	35	1.93

Tables:   1

The End!