Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008355.1 Corchorus capsularis cultivar CVL-1 contig08376, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37402

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6183--6292
44
2.5
44
83
0
157
21
8
27
42
1.81
6630--6670
2
21.0
2
80
14
50
43
2
0
53
1.13
6630--6667
11
3.5
11
85
7
51
42
2
0
55
1.14
6674--6708
8
4.4
8
96
0
61
37
0
22
40
1.55
10270--10312
22
2.0
22
90
4
70
51
0
23
25
1.49
10358--10403
22
2.1
22
88
4
67
23
8
6
60
1.49
19394--19433
19
2.2
18
86
4
53
30
20
5
45
1.72
25423--25520
36
2.7
36
87
3
144
27
20
10
41
1.84
25613--26060
36
12.3
36
86
4
612
25
16
13
45
1.84
25613--26060
73
6.1
72
86
4
612
25
16
13
45
1.84
25997--26225
36
6.2
36
79
12
209
25
18
11
44
1.84
26051--26213
75
2.2
71
86
8
220
26
18
11
43
1.84
30091--30149
23
2.6
23
78
5
66
18
8
10
62
1.51
32389--33410
41
24.8
41
74
8
709
12
28
18
40
1.87
32703--32748
23
2.0
23
87
4
67
15
26
8
50
1.73
32661--32789
64
2.0
64
88
5
190
14
27
14
43
1.85
32635--32916
105
2.7
106
90
3
446
15
27
17
39
1.89
32808--32853
23
2.0
23
91
4
76
13
28
8
50
1.70
32767--32894
64
2.0
63
88
7
188
13
28
15
42
1.85

Tables:   1

The End!