genome.fa.s8356.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008356.1 Corchorus capsularis cultivar CVL-1 contig08377, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87270

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1597--1643	24	1.9	25	86	4	69	70	6	6	17	1.30
7550--7700	36	4.2	36	89	2	214	29	21	9	39	1.86
7693--7972	37	7.7	37	88	5	358	22	28	8	40	1.83
7807--7904	18	5.3	18	65	13	65	20	32	6	40	1.77
8128--8837	76	9.3	76	95	0	1235	24	21	10	43	1.84
8839--9542	37	18.9	36	79	7	617	25	18	9	45	1.80
9521--9664	41	3.5	40	93	0	225	27	22	11	38	1.89
12834--12894	26	2.3	26	83	5	79	47	16	18	18	1.83
15466--15490	13	1.9	13	100	0	50	60	8	0	32	1.26
18490--18523	15	2.3	15	94	0	59	20	11	11	55	1.67
19963--20099	68	2.0	69	92	1	231	45	9	8	36	1.66
23107--23231	33	3.8	32	82	8	108	10	25	41	22	1.85
23144--23250	33	3.2	33	85	5	128	9	28	42	20	1.83
23230--23269	21	1.9	21	89	0	62	20	35	25	20	1.96
28726--28759	8	4.1	8	85	7	50	23	2	14	58	1.50
29657--29781	33	3.8	32	84	8	117	9	26	42	21	1.83
29695--29800	33	3.2	33	82	7	126	9	29	41	19	1.83
29780--29821	21	2.0	21	95	0	75	21	33	26	19	1.97
35312--35347	2	18.5	2	94	5	65	50	0	0	50	1.00
41592--41709	62	1.9	62	94	0	209	36	17	10	35	1.84
46160--46258	31	3.2	31	68	11	85	22	13	19	45	1.84
47953--48002	22	2.2	22	78	3	55	56	8	10	26	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54952--55122	84	2.0	84	98	0	333	26	18	24	29	1.98
57096--57122	14	1.9	14	100	0	54	37	11	29	22	1.89
57547--57627	26	3.0	26	83	7	99	18	18	19	43	1.89
61988--62077	40	2.2	40	84	4	108	46	10	14	28	1.77
61976--62077	42	2.5	42	82	4	118	46	8	15	29	1.76
62111--62581	70	6.7	67	90	4	568	42	7	20	28	1.79
62278--62336	31	2.0	30	90	6	93	44	5	18	32	1.72
62111--62581	140	3.4	139	93	2	789	42	7	20	28	1.79
62111--62581	210	2.2	210	94	1	818	42	7	20	28	1.79
62514--62746	41	5.7	41	80	3	247	44	10	18	27	1.82
62788--62946	41	3.9	41	94	1	266	45	10	22	21	1.82
62788--62972	41	4.5	41	86	6	232	44	10	21	23	1.82
62956--63206	32	7.5	32	82	12	290	43	7	19	29	1.78
62942--63206	68	3.9	69	87	8	359	43	7	20	29	1.78
62956--63206	100	2.5	102	85	8	338	43	7	19	29	1.78
65779--65822	21	2.1	21	83	8	54	25	9	13	52	1.70
65898--65975	29	2.7	29	82	9	79	24	8	17	48	1.76
73061--73128	25	2.7	25	90	0	109	23	25	29	22	1.99
74268--74310	22	1.9	23	90	4	70	44	18	20	16	1.87
76370--76412	21	2.0	21	90	0	68	37	6	0	55	1.27
81626--81658	2	16.5	2	100	0	66	48	0	0	51	1.00
81875--81917	13	2.9	16	73	20	56	9	4	23	62	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82273--82316	14	3.2	13	75	12	52	27	6	11	54	1.61
83276--83323	15	3.3	14	81	18	62	43	2	0	54	1.12

Tables:   1

The End!