genome.fa.s8358.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008358.1 Corchorus capsularis cultivar CVL-1 contig08379, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149241

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828--932	33	3.2	32	80	10	97	23	8	20	47	1.77
962--1066	33	3.2	33	93	0	174	29	10	16	43	1.81
3034--3071	10	3.9	10	89	3	60	28	2	39	28	1.70
3292--3345	24	2.3	23	75	15	58	44	3	12	38	1.61
3871--3901	14	2.2	14	100	0	62	41	6	6	45	1.55
6884--7138	128	2.0	126	84	6	327	30	19	10	38	1.86
18148--18184	18	2.1	18	94	0	65	32	2	27	37	1.71
22845--22901	28	2.0	28	83	12	73	49	1	1	47	1.22
22847--22916	34	2.0	35	83	8	90	48	2	1	47	1.25
24581--24605	7	3.6	7	100	0	50	40	0	16	44	1.47
25789--25884	51	1.9	51	89	2	149	25	9	27	38	1.86
26620--26665	21	2.2	21	100	0	92	50	8	23	17	1.74
26876--26983	37	2.9	37	98	0	207	40	12	12	34	1.81
30771--30807	19	2.0	18	89	5	56	40	13	21	24	1.89
34379--34417	17	2.3	17	83	12	53	0	17	0	82	0.68
34380--34415	12	2.9	12	88	8	54	0	19	0	80	0.71
46432--46468	2	19.5	2	89	10	60	51	0	0	48	1.00
47587--47639	25	2.2	24	80	12	63	39	7	1	50	1.41
49344--49383	5	7.6	5	88	5	53	55	0	22	22	1.44
70690--70727	19	2.0	19	85	10	51	44	15	26	13	1.83
70832--70883	21	2.5	21	77	0	59	32	9	25	32	1.88
76086--76674	67	8.8	67	77	8	529	22	18	16	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76101--76696	133	4.4	132	82	7	569	22	18	16	42	1.89
76101--76615	133	3.8	133	84	5	581	22	18	15	42	1.89
76239--76674	200	2.2	198	79	8	463	23	18	16	41	1.90
76798--76830	6	5.5	6	100	0	66	51	0	18	30	1.46
78165--78247	39	2.1	40	88	2	123	26	20	10	42	1.85
78165--78257	39	2.3	40	85	5	109	26	20	10	41	1.85
78896--78923	3	9.3	3	100	0	56	67	0	0	32	0.91
79555--79588	14	2.4	15	85	14	54	35	8	17	38	1.81
80829--80865	6	6.0	6	93	3	56	81	0	18	0	0.70
82026--82290	55	4.6	55	74	14	221	29	16	21	32	1.95
82057--82276	59	3.7	59	81	5	234	27	17	21	34	1.95
82247--82414	38	4.2	38	85	11	237	33	16	19	30	1.94
82290--82613	46	6.8	46	76	14	288	32	15	20	32	1.93
82252--82459	84	2.5	84	95	0	362	33	16	18	31	1.93
82420--82702	54	5.4	54	83	7	339	30	15	20	33	1.94
82369--82613	101	2.4	100	91	0	382	31	14	20	33	1.93
82559--82648	29	3.2	29	64	17	82	27	16	22	33	1.95
82756--82954	35	5.7	35	88	1	256	30	14	23	32	1.94
82929--83040	42	2.6	43	83	4	129	25	17	24	32	1.97
83016--83085	35	2.0	35	94	0	122	22	20	28	28	1.98
83212--83811	90	7.0	79	85	5	376	26	17	25	31	1.97
83087--83834	270	2.9	265	80	10	819	25	16	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83374--83834	90	5.1	90	89	2	676	25	17	25	31	1.97
84517--84561	7	6.0	7	85	12	54	82	0	17	0	0.68
84517--84562	15	2.9	16	90	6	76	80	0	19	0	0.71
87448--87474	11	2.5	11	100	0	54	40	18	0	40	1.51
87526--88137	67	9.1	67	78	7	573	21	18	16	42	1.88
87526--88177	133	4.9	133	80	8	610	22	18	16	42	1.89
92663--92880	39	5.7	38	95	2	384	24	37	17	20	1.94
92663--92880	77	2.8	76	95	3	384	24	37	17	20	1.94
92663--92880	116	1.9	114	94	3	384	24	37	17	20	1.94
95986--96039	27	2.0	27	100	0	108	25	7	7	59	1.51
97749--97819	29	2.4	30	83	2	90	21	9	25	43	1.83
100963--101025	30	2.1	31	91	5	103	17	34	19	28	1.94
101397--101472	33	2.3	33	90	0	116	42	22	10	25	1.85
101409--101479	33	2.2	33	94	0	124	39	16	9	33	1.82
103997--104071	30	2.5	30	88	0	105	14	25	20	40	1.90
110282--110361	36	2.2	37	88	4	119	28	21	10	40	1.85
110353--110592	41	6.3	37	80	12	179	27	23	7	41	1.82
110371--110469	32	2.9	31	79	13	99	26	25	8	40	1.83
110443--110597	41	3.8	41	91	2	222	26	21	9	42	1.83
110434--110612	41	4.3	40	86	4	196	25	22	7	44	1.80
110603--110929	37	8.6	37	86	4	438	26	18	8	45	1.79
110594--110929	74	4.4	78	88	6	492	25	19	8	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110907--111443	71	7.6	71	93	0	896	24	23	9	42	1.83
111254--111446	31	5.7	31	66	28	99	24	21	8	45	1.79
110907--111443	283	1.9	283	92	0	912	24	23	9	42	1.83
114865--114923	30	2.0	30	93	0	100	37	18	27	16	1.93
123120--123199	30	2.7	30	84	0	97	42	21	20	16	1.89
125993--126070	30	2.5	31	83	8	95	24	7	23	44	1.79
126442--126502	30	2.0	30	87	6	88	29	14	32	22	1.94
130965--131001	11	3.3	11	92	3	56	75	0	24	0	0.80
131085--131129	23	1.9	24	86	4	65	8	20	20	51	1.73
132194--132698	42	12.3	43	74	16	330	50	6	21	21	1.72
132199--132359	21	7.5	22	81	6	143	50	8	20	20	1.74
132318--132388	35	2.0	37	91	5	119	49	8	21	21	1.75
132534--132698	21	7.9	21	83	6	210	49	6	21	22	1.71
132453--132658	57	3.5	57	82	11	238	50	5	20	22	1.68
132563--132622	14	4.3	14	73	21	54	50	6	20	23	1.71
132759--132822	27	2.2	29	83	13	96	64	0	21	14	1.29
135290--135758	48	9.8	48	88	0	643	39	24	23	12	1.90
136235--136363	51	2.5	51	86	5	163	34	23	2	39	1.67
136189--136635	100	4.5	100	83	4	463	34	17	5	43	1.71
136473--136551	23	3.3	23	64	19	61	30	13	7	48	1.71
136189--136635	50	8.9	49	83	6	418	34	17	5	43	1.71
138086--138110	12	2.1	12	100	0	50	40	0	16	44	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138901--138939	20	2.0	20	89	0	60	41	20	10	28	1.85
139080--139113	14	2.4	14	95	0	59	50	14	11	23	1.76
148714--148793	27	3.0	27	88	0	79	20	18	21	40	1.92

Tables:   1

The End!