Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008363.1 Corchorus capsularis cultivar CVL-1 contig08384, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70307

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7083--7198
44
2.7
44
89
4
173
50
0
9
38
1.41
7084--7258
17
11.8
16
67
25
66
50
0
9
38
1.40
7102--7340
74
3.2
74
89
1
354
51
2
9
37
1.46
7147--7222
30
2.5
30
93
0
125
50
0
9
40
1.34
7076--7393
118
2.7
115
83
8
408
51
1
9
37
1.43
7177--7266
44
2.0
44
93
0
153
50
0
10
40
1.36
7221--7288
30
2.3
30
84
5
84
51
2
10
35
1.51
7251--7394
44
3.3
44
88
1
200
54
2
7
35
1.44
7127--7384
74
3.5
73
82
11
280
51
1
9
37
1.44
7414--7489
32
2.4
32
84
4
109
22
19
21
36
1.95
7426--7501
32
2.4
32
88
4
100
19
23
22
34
1.97
11785--11817
10
3.3
10
87
12
50
27
21
0
51
1.48
13339--13506
39
4.4
39
80
3
164
27
12
33
26
1.92
13339--13506
78
2.2
78
82
3
198
27
12
33
26
1.92
14009--14038
2
15.0
2
92
0
51
50
3
0
46
1.18
17878--17910
14
2.3
15
89
5
50
42
0
6
51
1.26
17846--17925
44
1.9
40
82
10
97
40
1
3
55
1.26
24077--24444
56
6.6
56
94
1
632
26
22
12
38
1.90
25058--25090
14
2.3
15
89
5
50
33
9
12
45
1.73
35869--35899
2
15.5
2
100
0
62
48
0
0
51
1.00
36697--37358
48
13.8
48
82
4
649
11
23
24
40
1.87
36701--37357
96
6.9
96
84
2
723
11
23
24
40
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36697--37357
144
4.6
144
83
2
729
11
23
24
40
1.87
49927--50025
35
2.8
34
89
3
135
30
18
22
29
1.97
50058--50262
90
2.2
92
87
1
288
27
17
28
26
1.98
53035--53059
10
2.5
10
100
0
50
48
20
8
24
1.76
53186--53223
15
2.5
15
91
8
60
47
31
5
15
1.68
53987--54021
13
2.7
13
95
0
61
20
11
8
60
1.57
54341--54437
39
2.5
39
86
3
124
24
10
8
56
1.60
60788--60812
10
2.5
10
100
0
50
48
20
8
24
1.76
60939--60976
15
2.5
15
91
8
60
47
31
5
15
1.68
61740--61774
13
2.7
13
95
0
61
20
11
8
60
1.57
61771--61797
6
4.5
6
100
0
54
29
0
14
55
1.40
62869--62964
50
1.9
51
83
10
126
27
10
16
45
1.80
62890--62991
50
2.0
50
81
7
118
33
9
11
45
1.74
63221--63245
2
12.5
2
100
0
50
48
0
0
52
1.00
64044--64654
48
12.8
48
82
2
627
12
24
24
39
1.89

Tables:   1

The End!