Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008366.1 Corchorus capsularis cultivar CVL-1 contig08387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57808

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5327--5358
14
2.2
15
94
5
57
75
6
12
6
1.19
11817--11988
22
7.8
22
72
10
109
33
15
9
41
1.79
13054--13933
44
20.1
43
64
17
198
35
16
9
38
1.81
13078--13236
82
1.9
83
84
3
214
33
16
9
40
1.80
13311--13573
81
3.2
81
74
11
289
35
15
9
39
1.81
13247--13573
167
2.0
167
96
0
600
36
15
9
38
1.81
13247--13446
42
4.8
42
69
13
117
35
17
10
37
1.83
13054--13579
22
24.9
22
66
15
173
35
16
9
38
1.81
13622--14009
22
17.6
22
69
14
176
34
17
9
39
1.81
13723--13808
21
3.9
20
75
15
57
34
16
10
38
1.83
14093--14243
22
6.8
22
73
13
105
37
17
10
35
1.84
14089--14242
44
3.5
43
75
10
141
35
18
10
35
1.85
14092--14243
67
2.3
66
86
5
200
36
17
10
35
1.84
16647--16693
24
2.0
24
83
8
60
25
6
25
42
1.78
19595--19651
21
2.7
21
80
0
69
38
10
21
29
1.87
25897--25932
6
6.2
6
93
3
56
52
11
0
36
1.37
30192--30232
15
2.7
15
96
0
73
7
26
21
43
1.79
37365--37527
78
2.1
78
95
0
299
47
0
14
38
1.45
37458--37587
62
2.1
62
91
0
206
49
0
11
38
1.45
49309--49339
12
2.6
12
100
0
62
0
25
0
74
0.82
52243--52268
2
13.0
2
100
0
52
50
0
0
50
1.00
57259--57285
11
2.5
11
100
0
54
85
0
0
14
0.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57502--57529
1
28.0
1
100
0
56
100
0
0
0
0.00

Tables:   1

The End!