Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008379.1 Corchorus capsularis cultivar CVL-1 contig08400, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4709
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.28


Found at i:2430 original size:18 final size:18

Alignment explanation


    Indices: 2407--2442  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       2397 CTTATGAAAT

                      *       
       2407 TCCAAAAAATTTTCAAAA
          1 TCCAAAAAATCTTCAAAA

                              
       2425 TCCAAAAAATCTTCAAAA
          1 TCCAAAAAATCTTCAAAA

       2443 AAACATTTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25


Consensus pattern (18 bp):   
TCCAAAAAATCTTCAAAA
Done.