genome.fa.s8381.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008381.1 Corchorus capsularis cultivar CVL-1 contig08402, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25866

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153--182	2	15.0	2	100	0	60	50	0	0	50	1.00
2135--2212	29	2.6	30	76	15	90	16	14	29	39	1.88
10414--10718	102	3.0	101	84	3	371	33	11	18	36	1.87
13693--13864	31	5.5	31	83	2	186	30	24	27	16	1.97
15577--15611	2	17.5	2	100	0	70	48	0	0	51	1.00
16429--16501	31	2.4	31	79	2	85	38	15	13	32	1.86
21352--21396	2	22.0	2	86	4	63	44	2	4	48	1.35
21431--21489	31	1.9	31	92	0	100	32	18	5	44	1.72
21604--21689	22	3.8	22	92	3	127	36	12	15	36	1.85
21580--21743	22	7.3	22	80	5	105	32	9	18	38	1.84
21863--21923	22	2.7	23	80	12	65	39	9	14	36	1.80
21929--22059	68	1.9	68	81	9	160	41	9	14	34	1.79
21975--22193	22	9.8	24	68	17	89	42	10	12	34	1.76
21997--22035	21	2.0	19	85	14	53	46	5	7	41	1.55
21940--22169	44	5.2	43	72	11	146	42	10	13	33	1.78
22021--22169	66	2.3	66	79	2	156	40	10	14	34	1.80
22028--22194	88	1.9	88	82	4	212	41	11	13	33	1.80
21984--22169	22	8.4	22	72	12	130	42	9	12	34	1.76
22277--22344	19	3.5	20	87	4	77	41	11	20	26	1.87
22275--22337	19	3.3	19	88	2	90	42	11	22	23	1.85
22332--22868	22	24.7	22	67	14	154	38	9	14	36	1.79
22332--22783	44	10.3	44	69	12	193	38	9	14	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22501--22604	23	4.6	23	79	3	95	38	7	13	40	1.73
22654--22739	45	1.9	45	83	4	111	33	11	16	38	1.85

Tables:   1

The End!