Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008382.1 Corchorus capsularis cultivar CVL-1 contig08403, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4147
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39


Found at i:2345 original size:15 final size:16

Alignment explanation


    Indices: 2323--2360  Score: 51
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       2313 CGCTCAAATG

                            
       2323 TCGGGTC-ATTTGGGT
          1 TCGGGTCAATTTGGGT

             *          *   
       2338 TTGGGTCAATTTTGGT
          1 TCGGGTCAATTTGGGT

                   
       2354 TCGGGTC
          1 TCGGGTC

       2361 TTTTTCAGTT


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  15    6  0.32
  16   13  0.68

ACGTcount: A:0.08, C:0.13, G:0.37, T:0.42


Consensus pattern (16 bp):   
TCGGGTCAATTTGGGT
Done.