Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008386.1 Corchorus capsularis cultivar CVL-1 contig08407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79787

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
151--180
15
2.0
15
93
0
51
20
10
26
43
1.83
2465--2517
27
2.0
27
85
7
74
39
9
1
49
1.46
2589--2640
25
2.0
25
85
7
68
38
7
1
51
1.42
6933--7030
22
4.5
22
79
12
94
37
8
14
39
1.76
7173--7307
22
6.1
21
71
10
92
34
9
20
35
1.86
10712--10918
22
9.4
22
72
11
102
39
14
11
35
1.81
10720--10858
68
2.0
69
87
4
201
39
14
10
35
1.81
11014--11097
22
3.8
22
79
0
96
30
26
5
36
1.80
11164--11239
22
3.5
21
73
21
75
38
13
10
38
1.79
11164--11261
44
2.2
44
83
7
119
33
13
13
39
1.83
12675--12720
15
2.9
16
77
6
58
43
30
13
13
1.81
16411--16516
54
2.0
52
89
5
160
28
12
19
39
1.88
21417--21452
13
2.6
14
86
13
56
0
11
30
58
1.33
24561--24594
16
2.1
16
100
0
68
23
23
17
35
1.95
28337--28444
52
2.1
52
98
0
207
60
9
6
24
1.51
28360--28443
26
3.2
26
65
24
68
59
10
7
22
1.55
28564--28621
29
2.0
29
100
0
116
6
37
0
55
1.27
32196--32228
17
1.9
17
93
0
57
30
15
15
39
1.88
35070--35117
16
3.1
16
77
14
55
52
6
16
25
1.67
35878--35911
13
2.8
12
91
8
52
82
0
8
8
0.85
40911--40957
24
2.0
24
84
16
62
29
2
12
55
1.49
41680--41824
41
3.5
41
82
7
204
35
16
14
33
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41674--41879
82
2.5
83
82
9
233
33
16
14
35
1.89
42823--42873
25
2.0
25
92
0
84
17
21
1
58
1.48
42850--42943
36
2.8
32
76
17
109
12
23
4
59
1.51
42874--42969
36
2.7
36
82
6
122
14
25
4
56
1.56
42926--42952
14
1.9
14
100
0
54
14
18
0
66
1.25
42926--43012
20
4.3
21
67
18
60
16
21
3
58
1.52
43303--43508
38
5.3
39
90
4
278
28
15
6
49
1.70
43275--43508
77
3.1
76
84
7
273
28
16
6
48
1.71
44714--44745
15
2.1
15
94
0
55
0
43
0
56
0.99
47166--47220
26
2.1
26
82
0
65
45
21
12
20
1.84
54831--54882
25
2.1
25
82
13
63
46
1
0
51
1.12
56169--56206
11
3.5
11
85
10
51
57
2
0
39
1.12
66822--66857
1
36.0
1
94
0
63
0
2
0
97
0.18
68781--68818
18
2.1
19
90
5
60
47
18
10
23
1.79
72042--72120
32
2.5
32
83
2
97
21
31
18
27
1.97
72401--72427
9
3.0
9
100
0
54
66
11
11
11
1.45
72794--72826
15
2.2
15
89
10
50
0
27
6
66
1.15
74890--74990
28
2.9
38
68
27
114
39
9
13
36
1.79
77171--77250
33
2.5
32
82
8
99
17
18
25
38
1.92
77171--77265
32
2.9
32
78
6
102
18
18
24
37
1.94

Tables:   1

The End!