Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008391.1 Corchorus capsularis cultivar CVL-1 contig08412, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24905

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1601
199
8.1
199
84
3
1976
34
18
14
32
1.91
4917--5006
38
2.4
37
80
7
119
13
20
12
54
1.70
5853--5978
22
5.7
22
76
10
114
35
8
18
37
1.82
5940--5992
22
2.5
22
81
9
56
41
7
11
39
1.69
6101--6152
22
2.4
22
86
0
68
40
11
13
34
1.81
6164--6222
22
2.6
24
74
15
63
44
8
18
28
1.79
6183--6235
22
2.5
22
90
3
90
45
7
11
35
1.69
6308--6359
20
2.6
20
93
0
86
44
11
15
28
1.81
6308--6467
22
7.5
21
70
12
76
41
10
14
33
1.80
6659--6733
22
3.4
22
77
3
62
36
14
12
37
1.83
6683--6931
22
11.5
21
70
11
139
34
16
8
40
1.79
6724--6808
23
3.7
23
84
1
100
37
14
7
41
1.73
6717--6808
46
2.0
45
85
2
121
36
16
7
39
1.77
6944--6991
19
2.5
19
89
3
69
31
22
4
41
1.73
7217--7317
21
4.6
21
77
17
98
34
11
8
44
1.73
7088--7479
22
17.6
22
70
15
182
34
16
9
39
1.81
7515--7562
22
2.2
22
85
7
62
45
20
2
31
1.63
7537--7656
44
2.7
45
83
10
115
38
16
9
35
1.81
7570--7701
22
6.0
22
73
10
117
37
15
9
37
1.80
7574--7696
44
2.8
44
85
4
160
38
14
9
37
1.79
7864--7901
19
2.0
20
85
15
53
63
2
5
28
1.30
13852--13891
14
2.9
14
92
3
64
50
0
2
47
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14812--14866
24
2.3
24
83
0
65
20
20
25
34
1.96
15106--15168
30
2.1
30
85
5
83
44
4
6
44
1.50
15309--15653
172
2.0
171
99
0
681
32
22
20
24
1.97
15643--15676
17
1.9
18
88
5
52
32
2
29
35
1.73
19944--19969
2
13.0
2
100
0
52
50
0
0
50
1.00
24802--24826
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!