Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008393.1 Corchorus capsularis cultivar CVL-1 contig08414, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55979

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2896--2926
15
2.1
15
93
0
53
9
25
29
35
1.88
3979--4037
22
2.5
25
84
10
72
32
10
10
47
1.71
4294--4338
20
2.2
20
84
4
54
66
8
6
17
1.40
11528--11570
14
2.8
16
80
19
56
48
9
9
32
1.67
14084--14729
258
2.5
251
88
6
886
25
22
19
32
1.98
14461--14719
114
2.3
113
81
4
315
24
22
20
32
1.98
14461--14726
113
2.3
113
81
4
320
24
22
21
31
1.98
18600--18648
21
2.3
21
82
0
53
26
28
32
12
1.92
18699--18747
21
2.3
21
78
0
53
26
32
30
10
1.89
20890--20925
12
3.0
12
87
0
54
5
30
36
27
1.80
25715--25752
20
1.9
20
88
0
58
18
31
15
34
1.92
26896--27171
72
3.8
72
82
2
358
30
19
28
22
1.98
28449--28663
26
7.6
26
68
25
116
19
13
26
40
1.89
28419--28637
32
7.5
32
68
26
139
19
13
26
40
1.89
28437--28666
58
4.0
58
95
0
424
19
13
26
40
1.89
33010--33081
33
2.2
33
87
0
99
45
20
8
25
1.79
52670--52707
16
2.2
17
86
13
51
76
0
10
13
1.02
53179--53207
14
2.0
15
93
6
51
17
13
0
68
1.20
53683--53721
14
2.7
15
84
8
53
30
7
15
46
1.74
53799--53839
21
2.0
21
90
0
64
53
14
9
21
1.70

Tables:   1

The End!