Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01008394.1 Corchorus capsularis cultivar CVL-1 contig08415, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58670
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:601 original size:16 final size:16
Alignment explanation
Indices: 563--606 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
553 GATCTTTATC
563 TCATATATAAATATAA
1 TCATATATAAATATAA
* *
579 TTATATATATATATAA
1 TCATATATAAATATAA
*
595 TCGTATA-AAATA
1 TCATATATAAATA
607 CTAAAAAATA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (16 bp):
TCATATATAAATATAA
Found at i:2813 original size:22 final size:22
Alignment explanation
Indices: 2788--2830 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
2778 AAAATAAAAC
2788 ATATTAATAATTGGGGCTAAAT
1 ATATTAATAATTGGGGCTAAAT
* *
2810 ATATTTATAATTGGGGTTAAA
1 ATATTAATAATTGGGGCTAAA
2831 CCTTAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (22 bp):
ATATTAATAATTGGGGCTAAAT
Found at i:5421 original size:16 final size:17
Alignment explanation
Indices: 5402--5494 Score: 106
Period size: 16 Copynumber: 5.8 Consensus size: 17
5392 GCCTGAACCG
*
5402 AAACCC-AAAAAAGATC
1 AAACCCGAAAAAAGCTC
*
5418 AAACCCGAAAAAA-CAC
1 AAACCCGAAAAAAGCTC
*
5434 GAACCCG-AAAAAGCTC
1 AAACCCGAAAAAAGCTC
*
5450 AAACCCGAAAAAA-CCC
1 AAACCCGAAAAAAGCTC
*
5466 GAACCCG-AAAAAGCTC
1 AAACCCGAAAAAAGCTC
5482 AAACCCGAAAAAA
1 AAACCCGAAAAAA
5495 CCCGAATCTG
Statistics
Matches: 63, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
15 10 0.16
16 37 0.59
17 16 0.25
ACGTcount: A:0.56, C:0.30, G:0.11, T:0.03
Consensus pattern (17 bp):
AAACCCGAAAAAAGCTC
Found at i:5508 original size:32 final size:32
Alignment explanation
Indices: 5403--5500 Score: 169
Period size: 32 Copynumber: 3.1 Consensus size: 32
5393 CCTGAACCGA
* * *
5403 AACCCAAAAAAGATCAAACCCGAAAAAACACG
1 AACCCGAAAAAGCTCAAACCCGAAAAAACCCG
5435 AACCCGAAAAAGCTCAAACCCGAAAAAACCCG
1 AACCCGAAAAAGCTCAAACCCGAAAAAACCCG
5467 AACCCGAAAAAGCTCAAACCCGAAAAAACCCG
1 AACCCGAAAAAGCTCAAACCCGAAAAAACCCG
5499 AA
1 AA
5501 TCTGAAAATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.54, C:0.32, G:0.11, T:0.03
Consensus pattern (32 bp):
AACCCGAAAAAGCTCAAACCCGAAAAAACCCG
Found at i:5734 original size:31 final size:32
Alignment explanation
Indices: 5656--5760 Score: 151
Period size: 32 Copynumber: 3.3 Consensus size: 32
5646 ACCCAAACAG
*
5656 AACCCGAACCTGAATTAATCTGACCCAAATTC
1 AACCCGAACCTGAATTAACCTGACCCAAATTC
5688 AACCCGAACCTGAATTAACCTGACCCAAATT-
1 AACCCGAACCTGAATTAACCTGACCCAAATTC
* *
5719 AAGCCGAATCC-GAATTAACCTGACCCAAATCC
1 AACCCGAA-CCTGAATTAACCTGACCCAAATTC
*
5751 AACTCGAACC
1 AACCCGAACC
5761 CGACTCAAGC
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
31 28 0.42
32 38 0.58
ACGTcount: A:0.38, C:0.33, G:0.10, T:0.18
Consensus pattern (32 bp):
AACCCGAACCTGAATTAACCTGACCCAAATTC
Found at i:6082 original size:25 final size:26
Alignment explanation
Indices: 6049--6114 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 26
6039 GACTTTTCAG
* *
6049 AAAATAAAAATATTAAAAAAT-CATA
1 AAAATAAAAAAATTAAAAAATAAATA
*
6074 AAAATAAAAAAATTAAGAAATAAATA
1 AAAATAAAAAAATTAAAAAATAAATA
6100 ATAAATAAATAAAAT
1 A-AAATAAA-AAAAT
6115 AAACATTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
25 19 0.54
26 4 0.11
27 7 0.20
28 5 0.14
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (26 bp):
AAAATAAAAAAATTAAAAAATAAATA
Found at i:6084 original size:8 final size:8
Alignment explanation
Indices: 6049--6113 Score: 51
Period size: 8 Copynumber: 8.1 Consensus size: 8
6039 GACTTTTCAG
6049 AAAATAAA
1 AAAATAAA
* *
6057 AATATTAA
1 AAAATAAA
*
6065 AAAATCATA
1 AAAAT-AAA
6074 AAAATAAA
1 AAAATAAA
*
6082 AAAATTAA
1 AAAATAAA
*
6090 GAAAT-AA
1 AAAATAAA
*
6097 ATAATAAA
1 AAAATAAA
*
6105 TAAATAAA
1 AAAATAAA
6113 A
1 A
6114 TAAACATTAT
Statistics
Matches: 42, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
7 5 0.12
8 31 0.74
9 6 0.14
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (8 bp):
AAAATAAA
Found at i:6462 original size:20 final size:19
Alignment explanation
Indices: 6434--6510 Score: 82
Period size: 20 Copynumber: 3.9 Consensus size: 19
6424 ACTGATTATG
*
6434 TTATTATATATAAAACATAT
1 TTATAATATATAAAA-ATAT
6454 TTATAATATATATAAAATAT
1 TTATAATATATA-AAAATAT
* * *
6474 ATATAATATATTAAATTAT
1 TTATAATATATAAAAATAT
*
6493 TTATGATATATATAAAAT
1 TTATAATATATA-AAAAT
6511 GTATGTAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
19 15 0.32
20 29 0.62
21 3 0.06
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (19 bp):
TTATAATATATAAAAATAT
Found at i:6464 original size:11 final size:11
Alignment explanation
Indices: 6450--6556 Score: 50
Period size: 11 Copynumber: 10.4 Consensus size: 11
6440 TATATAAAAC
6450 ATATTTATAAT
1 ATATTTATAAT
*
6461 ATA--TATAAA
1 ATATTTATAAT
*
6470 ATATATATAAT
1 ATATTTATAAT
6481 ATA-TTA-AAT
1 ATATTTATAAT
*
6490 -TATTTATGAT
1 ATATTTATAAT
* *
6500 ATATATAAAAT
1 ATATTTATAAT
* * *
6511 GTATGTAAAAT
1 ATATTTATAAT
*
6522 ATATGTA-AA-
1 ATATTTATAAT
*
6531 ATATATA-AATT
1 ATATTTATAA-T
*
6542 ATATTTATGAT
1 ATATTTATAAT
6553 ATAT
1 ATAT
6557 ATAAAAATAT
Statistics
Matches: 75, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
8 2 0.03
9 22 0.29
10 6 0.08
11 44 0.59
12 1 0.01
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (11 bp):
ATATTTATAAT
Found at i:6539 original size:9 final size:9
Alignment explanation
Indices: 6455--6545 Score: 56
Period size: 9 Copynumber: 9.3 Consensus size: 9
6445 AAAACATATT
*
6455 TATAATATA
1 TATAAAATA
6464 TATAAAATA
1 TATAAAATA
*
6473 TATATAATA
1 TATAAAATA
*
6482 TATTAAATTATT
1 TA-TAAA--ATA
* *
6494 TATGATATA
1 TATAAAATA
6503 TATAAAATGTA
1 TATAAAA--TA
*
6514 TGTAAAATA
1 TATAAAATA
6523 TATGTAAAATA
1 TA--TAAAATA
*
6534 TATAAATTA
1 TATAAAATA
6543 TAT
1 TAT
6546 TTATGATATA
Statistics
Matches: 63, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
9 37 0.59
10 3 0.05
11 19 0.30
12 4 0.06
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (9 bp):
TATAAAATA
Found at i:6634 original size:20 final size:20
Alignment explanation
Indices: 6609--6648 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
6599 ATATTATTAA
**
6609 AAACCGCCCCAAACCGACCG
1 AAACCGCCAAAAACCGACCG
*
6629 AAACCGTCAAAAACCGACCG
1 AAACCGCCAAAAACCGACCG
6649 CCTCGGTTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.42, G:0.15, T:0.03
Consensus pattern (20 bp):
AAACCGCCAAAAACCGACCG
Found at i:8301 original size:123 final size:123
Alignment explanation
Indices: 8058--8302 Score: 291
Period size: 124 Copynumber: 2.0 Consensus size: 123
8048 CTTTTTAAAT
*
8058 TAAAATGGTAAAAATAAAATAATTATAAAATATTGAATTTAATTAAATGAAAATAGAGTTTTTAA
1 TAAAATGGTAAAAATAAAATAATTATAAAATATTGAATTTAATTAAATAAAAATAGAGTTTTTAA
** *** * *
8123 TAGAATAAAACTGTATATTAAAAAATTTTATTATATACAAATTTTTATTGAAAAATAG
66 TAGAATAAAACTCAATATTAAAAAATGACATTATATACAAATATGTATTGAAAAATAG
* *
8181 TAAAATGGTAAAAATAAAGTAATTATAAAGATATT-AGATTTAATTGAATAAAAATAGAGTTTTT
1 TAAAATGGTAAAAATAAAATAATTATAAA-ATATTGA-ATTTAATTAAATAAAAATAGAGTTTTT
* * ** *
8245 AGTATAATAAAACTACAATAGTTAAGCAATGACATT-TA-AGAAATATGT-TTGAAAAATA
64 AATAGAATAAAACT-CAATA-TTAAAAAATGACATTATATACAAATATGTATTGAAAAATA
8303 AGGGTATAAT
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
123 39 0.38
124 49 0.48
125 5 0.05
126 10 0.10
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.35
Consensus pattern (123 bp):
TAAAATGGTAAAAATAAAATAATTATAAAATATTGAATTTAATTAAATAAAAATAGAGTTTTTAA
TAGAATAAAACTCAATATTAAAAAATGACATTATATACAAATATGTATTGAAAAATAG
Found at i:9273 original size:3 final size:3
Alignment explanation
Indices: 9265--9291 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
9255 TTAAACAGAA
9265 GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
9292 AATAACTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:9852 original size:3 final size:3
Alignment explanation
Indices: 9839--9886 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
9829 TTTAGTATAT
9839 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9886 A
1 A
9887 ACCCTAATTA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10337 original size:24 final size:24
Alignment explanation
Indices: 10310--10357 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
10300 AAGGTTATCC
10310 CCAAACTGCTATATGCTCAGTATT
1 CCAAACTGCTATATGCTCAGTATT
* *
10334 CCAAACTGTTGTATGCTCAGTATT
1 CCAAACTGCTATATGCTCAGTATT
10358 TTACTCTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (24 bp):
CCAAACTGCTATATGCTCAGTATT
Found at i:14233 original size:49 final size:49
Alignment explanation
Indices: 14174--14274 Score: 150
Period size: 49 Copynumber: 2.1 Consensus size: 49
14164 AAAAAAGTAA
*
14174 AAGAAAGAGTAA-TCAGTAGGTAGCTTAACTCAGAGTAATTAAGCTAAAG
1 AAGAAAGAGTAAGT-AGTAAGTAGCTTAACTCAGAGTAATTAAGCTAAAG
* * *
14223 AAGAAAGAGTAAGTAGTAATTAGCTTAATTCAGAGTAATTAAGTTAAAG
1 AAGAAAGAGTAAGTAGTAAGTAGCTTAACTCAGAGTAATTAAGCTAAAG
14272 AAG
1 AAG
14275 TGAAAGGAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
49 46 0.98
50 1 0.02
ACGTcount: A:0.47, C:0.07, G:0.22, T:0.25
Consensus pattern (49 bp):
AAGAAAGAGTAAGTAGTAAGTAGCTTAACTCAGAGTAATTAAGCTAAAG
Found at i:14371 original size:21 final size:22
Alignment explanation
Indices: 14338--14378 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
14328 AAAGAAAAAG
14338 AGTAAAAGTTGAAAGAGTAACC
1 AGTAAAAGTTGAAAGAGTAACC
*
14360 AGTAGAAG-TGAAAGAGTAA
1 AGTAAAAGTTGAAAGAGTAA
14379 AAGAAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.51, C:0.05, G:0.27, T:0.17
Consensus pattern (22 bp):
AGTAAAAGTTGAAAGAGTAACC
Found at i:14408 original size:22 final size:21
Alignment explanation
Indices: 14374--14414 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
14364 GAAGTGAAAG
14374 AGTAAAAGAAAAATGAGTAATC
1 AGTAAAAGAAAAA-GAGTAATC
14396 AGTAGAAAG-AAAAGAGTAA
1 AGTA-AAAGAAAAAGAGTAA
14415 AAGTAAGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.33
22 8 0.44
23 4 0.22
ACGTcount: A:0.61, C:0.02, G:0.22, T:0.15
Consensus pattern (21 bp):
AGTAAAAGAAAAAGAGTAATC
Found at i:14527 original size:15 final size:14
Alignment explanation
Indices: 14478--14525 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
14468 AGTAGAAGAA
14478 AAAAGAGTAAAAGT
1 AAAAGAGTAAAAGT
* *
14492 AAGAGAAGTAATCAGT
1 AAAAG-AGTAA-AAGT
*
14508 TAAAGAGTAAAAGT
1 AAAAGAGTAAAAGT
14522 AAAA
1 AAAA
14526 AGGAGTCAGC
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 10 0.38
15 10 0.38
16 6 0.23
ACGTcount: A:0.60, C:0.02, G:0.21, T:0.17
Consensus pattern (14 bp):
AAAAGAGTAAAAGT
Found at i:14527 original size:37 final size:36
Alignment explanation
Indices: 14311--14507 Score: 233
Period size: 36 Copynumber: 5.4 Consensus size: 36
14301 GAGTTAAAAA
*
14311 AAGAAAAGTAATCAGTA-AAAGAAAAAGAGTAAAAGTT
1 AAGAGAAGTAATCAGTAGAAAG-AAAAGAGTAAAAG-T
* * *
14348 GAA-AG-AGTAACCAGTAG-AAGTGAAAGAGTAAAAGA
1 -AAGAGAAGTAATCAGTAGAAAG-AAAAGAGTAAAAGT
*
14383 AAAATG-AGTAATCAGTAGAAAGAAAAGAGTAAAAGT
1 AAGA-GAAGTAATCAGTAGAAAGAAAAGAGTAAAAGT
*
14419 AAGAGAAGTAATCGGTAGAAAGAAAAGAGTAAAAGT
1 AAGAGAAGTAATCAGTAGAAAGAAAAGAGTAAAAGT
* *
14455 AAGAGGAGTAATCAGTAGAAGAAAAAAGAGTAAAAGT
1 AAGAGAAGTAATCAGTAGAA-AGAAAAGAGTAAAAGT
14492 AAGAGAAGTAATCAGT
1 AAGAGAAGTAATCAGT
14508 TAAAGAGTAA
Statistics
Matches: 139, Mismatches: 14, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
34 2 0.01
35 2 0.01
36 99 0.71
37 34 0.24
38 2 0.01
ACGTcount: A:0.57, C:0.04, G:0.25, T:0.15
Consensus pattern (36 bp):
AAGAGAAGTAATCAGTAGAAAGAAAAGAGTAAAAGT
Found at i:14703 original size:68 final size:67
Alignment explanation
Indices: 14593--14750 Score: 237
Period size: 68 Copynumber: 2.3 Consensus size: 67
14583 AGGAAAAATC
*
14593 AGTAAAAGGAGTAAAAGGAGTAAGCAGTAGTAATTAGCTTAATTCAGAGCAATTAAGTTAATCAA
1 AGTAAAAGAAGTAAAAGGAGTAAGCAGTAGTAATTAGCTTAATTCAGAGCAATTAAGTTAATCAA
14658 GA
66 GA
* *
14660 AGTAAAAGAAGTAAAAGGAAGTAA-CTAGTAGTAATTAGTTTAATTCAGAGCAATTAAGTTTATC
1 AGTAAAAGAAGTAAAAGG-AGTAAGC-AGTAGTAATTAGCTTAATTCAGAGCAATTAAGTTAATC
14724 AAGA
64 AAGA
* * *
14728 AGTAAAAGTAGTAACAGTAGTAA
1 AGTAAAAGAAGTAAAAGGAGTAA
14751 TTAGCTTAAT
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
67 23 0.28
68 60 0.72
ACGTcount: A:0.47, C:0.06, G:0.21, T:0.25
Consensus pattern (67 bp):
AGTAAAAGAAGTAAAAGGAGTAAGCAGTAGTAATTAGCTTAATTCAGAGCAATTAAGTTAATCAA
GA
Found at i:14785 original size:57 final size:59
Alignment explanation
Indices: 14665--14787 Score: 151
Period size: 57 Copynumber: 2.1 Consensus size: 59
14655 CAAGAAGTAA
* **
14665 AAGAAGTAAAAGGAAGTAACTAGTAGTAATTAGTTTAATTCAGAGCAATTAAGTTTATC
1 AAGAAGTAAAAGGAAGTAACTAGTAGTAATTAGCTTAATTCAGAGCAATTAAGTCAATC
* * * * * *
14724 AAGAAGTAAAA-GTAGTAAC-AGTAGTAATTAGCTTAATTCGGGGTAATTGAGTCAATT
1 AAGAAGTAAAAGGAAGTAACTAGTAGTAATTAGCTTAATTCAGAGCAATTAAGTCAATC
14781 AAGAAGT
1 AAGAAGT
14788 TCAATGGGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 37 0.67
58 7 0.13
59 11 0.20
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (59 bp):
AAGAAGTAAAAGGAAGTAACTAGTAGTAATTAGCTTAATTCAGAGCAATTAAGTCAATC
Found at i:15111 original size:26 final size:26
Alignment explanation
Indices: 15081--15141 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
15071 ATATGTGAAT
* *
15081 ATATTAATACTCGTATAAGTTATTTA
1 ATATTAATAATCATATAAGTTATTTA
*
15107 ATATTAACAATCATATAAGTTATTTA
1 ATATTAATAATCATATAAGTTATTTA
15133 ATAATTAAT
1 AT-ATTAAT
15142 TATAAACGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (26 bp):
ATATTAATAATCATATAAGTTATTTA
Found at i:15621 original size:21 final size:21
Alignment explanation
Indices: 15597--15636 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
15587 AAAAAACAAT
*
15597 TTCATTAATGAAAACAAAAGA
1 TTCATTAATGAAAAAAAAAGA
15618 TTCATTAATGAAAAAAAAA
1 TTCATTAATGAAAAAAAAA
15637 AAAAACAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.25
Consensus pattern (21 bp):
TTCATTAATGAAAAAAAAAGA
Found at i:16267 original size:23 final size:23
Alignment explanation
Indices: 16223--16268 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
16213 TCTCTACATT
*
16223 CTCTTGTCCTTTACATAGTTCAA
1 CTCTTGTCCTTTACATACTTCAA
*
16246 CTCTTGT-CTTTTCTATACTTCAA
1 CTCTTGTCCTTTAC-ATACTTCAA
16269 TTTTTTACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.20, C:0.26, G:0.07, T:0.48
Consensus pattern (23 bp):
CTCTTGTCCTTTACATACTTCAA
Found at i:16495 original size:32 final size:33
Alignment explanation
Indices: 16449--16521 Score: 94
Period size: 32 Copynumber: 2.2 Consensus size: 33
16439 ACAAAGTTTA
* * * *
16449 TTTAACATGCATAATCTCTTC-TTCTACCTTTT
1 TTTATCATGCATAATCTCCTCTTTCTACCTCTC
*
16481 TTTATCATGTATAATCTCCTCTTTCTACCTCTC
1 TTTATCATGCATAATCTCCTCTTTCTACCTCTC
16514 TTTATCAT
1 TTTATCAT
16522 TAAAAAATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
32 18 0.51
33 17 0.49
ACGTcount: A:0.21, C:0.26, G:0.03, T:0.51
Consensus pattern (33 bp):
TTTATCATGCATAATCTCCTCTTTCTACCTCTC
Found at i:16600 original size:33 final size:33
Alignment explanation
Indices: 16555--16625 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
16545 TACTACCTTG
* *
16555 CATATTATTGGCACCTGATGTTGTCACATCAAA
1 CATATTAGTGGCACCTGAAGTTGTCACATCAAA
16588 CATATTAGTGGCACCTGAAGTTGTCACATCAAA
1 CATATTAGTGGCACCTGAAGTTGTCACATCAAA
*
16621 AATAT
1 CATAT
16626 AGTATCACAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (33 bp):
CATATTAGTGGCACCTGAAGTTGTCACATCAAA
Found at i:16656 original size:52 final size:52
Alignment explanation
Indices: 16578--16685 Score: 189
Period size: 52 Copynumber: 2.1 Consensus size: 52
16568 CCTGATGTTG
* *
16578 TCACATCAAACATATTAGTGGCACCTGAAGTTGTCACATCAAAAATATAGTA
1 TCACATCAAACATATTAGTGGCACCTGAAGTTATAACATCAAAAATATAGTA
*
16630 TCACATCAAGCATATTAGTGGCACCTGAAGTTATAACATCAAAAATATAGTA
1 TCACATCAAACATATTAGTGGCACCTGAAGTTATAACATCAAAAATATAGTA
16682 TCAC
1 TCAC
16686 TTTGACACCC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (52 bp):
TCACATCAAACATATTAGTGGCACCTGAAGTTATAACATCAAAAATATAGTA
Found at i:16722 original size:29 final size:29
Alignment explanation
Indices: 16680--16736 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
16670 AAAAATATAG
16680 TATCACTTTGACACCCGAAGTTGTCATAA
1 TATCACTTTGACACCCGAAGTTGTCATAA
*
16709 TATCATTTTGACACCCGAAGTTGTCATA
1 TATCACTTTGACACCCGAAGTTGTCATA
16737 TTAAGGATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (29 bp):
TATCACTTTGACACCCGAAGTTGTCATAA
Found at i:21992 original size:21 final size:21
Alignment explanation
Indices: 21953--22007 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
21943 AAGTAATCCC
21953 TATTTGGTGTAAT--TATCAT
1 TATTTGGTGTAATGATATCAT
21972 TATTTGGTGTAATGATATCAT
1 TATTTGGTGTAATGATATCAT
21993 T-TTTGAGTGTAATGA
1 TATTTG-GTGTAATGA
22008 AAAATCTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.39
20 4 0.12
21 16 0.48
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (21 bp):
TATTTGGTGTAATGATATCAT
Found at i:33936 original size:111 final size:111
Alignment explanation
Indices: 33742--33956 Score: 421
Period size: 111 Copynumber: 1.9 Consensus size: 111
33732 CTAATGTAAG
33742 CATCTATCCTATCAACCTAATGTAATCCTTGAGACGGATATGAGTAACTTCAATCACACATAACA
1 CATCTATCCTATCAACCTAATGTAATCCTTGAGACGGATATGAGTAACTTCAATCACACATAACA
33807 ACAATCCAACAGCATCTATGGTAAAACACTCATGATAATCCAACAA
66 ACAATCCAACAGCATCTATGGTAAAACACTCATGATAATCCAACAA
*
33853 CATCTATCTTATCAACCTAATGTAATCCTTGAGACGGATATGAGTAACTTCAATCACACATAACA
1 CATCTATCCTATCAACCTAATGTAATCCTTGAGACGGATATGAGTAACTTCAATCACACATAACA
33918 ACAATCCAACAGCATCTATGGTAAAACACTCATGATAAT
66 ACAATCCAACAGCATCTATGGTAAAACACTCATGATAAT
33957 GAAAATCAAA
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 103 1.00
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (111 bp):
CATCTATCCTATCAACCTAATGTAATCCTTGAGACGGATATGAGTAACTTCAATCACACATAACA
ACAATCCAACAGCATCTATGGTAAAACACTCATGATAATCCAACAA
Found at i:34767 original size:209 final size:209
Alignment explanation
Indices: 34397--34789 Score: 687
Period size: 209 Copynumber: 1.9 Consensus size: 209
34387 ATTCCGATCA
* * *
34397 TCTGATGTTGGTTTCACTGTCCTTCAAAATCTGCCATAATAGGAGAAAAAAGAAATATAAAGAAA
1 TCTGATGTTGGTTTCAATGTCCTTCAAAATCTGCCATAATAGGAGAAAAAAGAAACATAAACAAA
* *
34462 AAATGAAAATCAAAGCAGGAGCAAACCCATAAACATCACCAAATTGAAAACACATAAACAAATTA
66 AAATGAAAATCAAACCAGGAGCAAACCCATAAACATCAACAAATTGAAAACACATAAACAAATTA
*
34527 GGAAGAAGAGAAAGAATGATACTTGAAAACTCAAAATGGAGGGTCGAAATACATTATTCTTCCAT
131 GGAAGAAGAGAAAGAATGAAACTTGAAAACTCAAAATGGAGGGTCGAAATACATTATTCTTCCAT
34592 CTTAATTTCGGTCG
196 CTTAATTTCGGTCG
* *
34606 TCTGATGTTGGTTTCAATGTCCTTGAAAATCTGCCATAATAGGAGAAAAAATAAACATAAACAAA
1 TCTGATGTTGGTTTCAATGTCCTTCAAAATCTGCCATAATAGGAGAAAAAAGAAACATAAACAAA
* *
34671 AAATGGAAATCAAACCAGGAGCAAACCCATAAACATCAACAAATTGAAAACCCATAAACAAATTA
66 AAATGAAAATCAAACCAGGAGCAAACCCATAAACATCAACAAATTGAAAACACATAAACAAATTA
*
34736 GGAAGAAGAGAAAGAATGAAACTTTAAAACTCAAAATGGAGGGTCGAAATACAT
131 GGAAGAAGAGAAAGAATGAAACTTGAAAACTCAAAATGGAGGGTCGAAATACAT
34790 GATTAAACCT
Statistics
Matches: 173, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
209 173 1.00
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (209 bp):
TCTGATGTTGGTTTCAATGTCCTTCAAAATCTGCCATAATAGGAGAAAAAAGAAACATAAACAAA
AAATGAAAATCAAACCAGGAGCAAACCCATAAACATCAACAAATTGAAAACACATAAACAAATTA
GGAAGAAGAGAAAGAATGAAACTTGAAAACTCAAAATGGAGGGTCGAAATACATTATTCTTCCAT
CTTAATTTCGGTCG
Found at i:38316 original size:29 final size:29
Alignment explanation
Indices: 38264--38322 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
38254 CCATTTTTTC
*
38264 TACTGATTACTCTTTATCCTTTACCATTT
1 TACTGATTACTCTTCATCCTTTACCATTT
*
38293 TACTGATTACTCTTCACTCC-TTACTATTT
1 TACTGATTACTCTTCA-TCCTTTACCATTT
38322 T
1 T
38323 TCTTTACTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 24 0.89
30 3 0.11
ACGTcount: A:0.20, C:0.25, G:0.03, T:0.51
Consensus pattern (29 bp):
TACTGATTACTCTTCATCCTTTACCATTT
Found at i:38344 original size:17 final size:17
Alignment explanation
Indices: 38322--38371 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
38312 CTTACTATTT
38322 TTCTTTACTAATTACTC
1 TTCTTTACTAATTACTC
* *
38339 TTCTTTAC-CATT--TT
1 TTCTTTACTAATTACTC
*
38353 TTCTTTACTGATTACTC
1 TTCTTTACTAATTACTC
38370 TT
1 TT
38372 TACTGATCAC
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
14 9 0.35
15 3 0.12
16 3 0.12
17 11 0.42
ACGTcount: A:0.18, C:0.22, G:0.02, T:0.58
Consensus pattern (17 bp):
TTCTTTACTAATTACTC
Found at i:38371 original size:14 final size:14
Alignment explanation
Indices: 38354--38414 Score: 70
Period size: 14 Copynumber: 4.4 Consensus size: 14
38344 TACCATTTTT
38354 TCTTTACTGATTAC
1 TCTTTACTGATTAC
*
38368 TCTTTACTGATCAC
1 TCTTTACTGATTAC
* **
38382 TTTTTACT-ATTTTT
1 TCTTTACTGA-TTAC
38396 TCTTTACTGATTAC
1 TCTTTACTGATTAC
38410 TCTTT
1 TCTTT
38415 TACTTTTTAC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
13 1 0.03
14 35 0.95
15 1 0.03
ACGTcount: A:0.18, C:0.20, G:0.05, T:0.57
Consensus pattern (14 bp):
TCTTTACTGATTAC
Found at i:38387 original size:28 final size:29
Alignment explanation
Indices: 38356--38425 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
38346 CCATTTTTTC
38356 TTTACTGA-TTACTCTTTACTGATCACT-T
1 TTTACT-ATTTACTCTTTACTGATCACTCT
** *
38384 TTTACTATTTTTTCTTTACTGATTACTCT
1 TTTACTATTTACTCTTTACTGATCACTCT
*
38413 TTTACTTTTTACT
1 TTTACTATTTACT
38426 AATTACCATT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
27 1 0.03
28 22 0.65
29 11 0.32
ACGTcount: A:0.19, C:0.19, G:0.04, T:0.59
Consensus pattern (29 bp):
TTTACTATTTACTCTTTACTGATCACTCT
Found at i:38430 original size:22 final size:22
Alignment explanation
Indices: 38398--38804 Score: 220
Period size: 22 Copynumber: 19.5 Consensus size: 22
38388 CTATTTTTTC
38398 TTTACTGATTACTC-TTTTACTT
1 TTTACTGATTAC-CATTTTACTT
*
38420 TTTACTAATTACCATTTTACTT
1 TTTACTGATTACCATTTTACTT
*
38442 TTTACTGATTACCTTTTTACTCT
1 TTTACTGATTACCATTTTACT-T
*
38465 TTT-CTAATTACCA--TTAC-T
1 TTTACTGATTACCATTTTACTT
* *
38483 TTTACTGATTA-C-TATTACTC
1 TTTACTGATTACCATTTTACTT
38503 TTTACTGATTACCA-TTT--TT
1 TTTACTGATTACCATTTTACTT
* *
38522 TTTACCGATTA-CTTTTTAC--
1 TTTACTGATTACCATTTTACTT
**
38541 TTTACTCTTTACCATTTTACTT
1 TTTACTGATTACCATTTTACTT
* *
38563 TTTACTGATCT-CTCTTTACTTTACTC
1 TTTACTGAT-TAC-C---ATTTTACTT
*
38589 TTTACT-CTTCACCATTTTAC-T
1 TTTACTGATT-ACCATTTTACTT
* *
38610 TTTATTAATTA-C-TCTTTA-TT
1 TTTACTGATTACCAT-TTTACTT
* *
38630 TTT--T-ACTA---TTTTACTG
1 TTTACTGATTACCATTTTACTT
38646 TTTACTGATTACCA--TTACTT
1 TTTACTGATTACCATTTTACTT
* *
38666 TTTACTGATTA-C-TATTACTC
1 TTTACTGATTACCATTTTACTT
38686 TTTACTGATTACTC-TTTTACTT
1 TTTACTGATTAC-CATTTTACTT
* *
38708 GTTACTGATTA-C-TCTTTACTC
1 TTTACTGATTACCAT-TTTACTT
* *
38729 TTTACTAATTACCATTTTACCT
1 TTTACTGATTACCATTTTACTT
*
38751 TTTACTAATTATCC---TTACTT
1 TTTACTGATTA-CCATTTTACTT
*
38771 TTTACTGATTACTATTTTACTCT
1 TTTACTGATTACCATTTTACT-T
*
38794 TTT-CTAATTAC
1 TTTACTGATTAC
38805 TCTGATTATC
Statistics
Matches: 301, Mismatches: 41, Indels: 86
0.70 0.10 0.20
Matches are distributed among these distances:
15 4 0.01
16 5 0.02
17 3 0.01
18 8 0.03
19 38 0.13
20 80 0.27
21 25 0.08
22 108 0.36
23 13 0.04
24 1 0.00
25 2 0.01
26 14 0.05
ACGTcount: A:0.22, C:0.20, G:0.03, T:0.55
Consensus pattern (22 bp):
TTTACTGATTACCATTTTACTT
Found at i:38431 original size:14 final size:14
Alignment explanation
Indices: 38356--38462 Score: 74
Period size: 15 Copynumber: 7.4 Consensus size: 14
38346 CCATTTTTTC
*
38356 TTTACTGATTACTC
1 TTTACTGATTACTT
*
38370 TTTACTGATCACTT
1 TTTACTGATTACTT
**
38384 TTTACT-ATTTTTT
1 TTTACTGATTACTT
38397 CTTTACTGATTACTCT
1 -TTTACTGATTACT-T
** *
38413 TTTACTTTTTACTA
1 TTTACTGATTACTT
* *
38427 ATTACCAT-TTTACTT
1 TTTA-C-TGATTACTT
38442 TTTACTGATTACCTT
1 TTTACTGATTA-CTT
38457 TTTACT
1 TTTACT
38463 CTTTTCTAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
13 5 0.07
14 31 0.43
15 34 0.47
16 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.04, T:0.57
Consensus pattern (14 bp):
TTTACTGATTACTT
Found at i:38607 original size:121 final size:122
Alignment explanation
Indices: 38392--38740 Score: 264
Period size: 121 Copynumber: 2.9 Consensus size: 122
38382 TTTTTACTAT
*
38392 TTTTTCTTTACTGATTACTCTTTTACTTTTTACTAATTACCATTTTACTTTTTACTGATTACCTT
1 TTTTTCTTTACCGATTACTCTTTTAC-TTTTACTAATTACCATTTTACTTTTTACTGATTACCTT
*
38457 TTTACTCTTTTCTAATTACCATTACTTTTACTGATTACT-ATTACTCTTTACTGATTACCA
65 TTTACTCTTTACTAATTACC--TACTTTTACT-ATTACTAATTACTCTTTACTGATTACCA
**
38517 TTTTT-TTTACCGATTACT-TTTTAC-TTTACTCTTTACCATTTTACTTTTTACTGATCT-CTCT
1 TTTTTCTTTACCGATTACTCTTTTACTTTTACTAATTACCATTTTACTTTTTACTGAT-TAC-C-
* * * * ** *
38578 TTACTTTACTCTTTACT-CTTCACC-A-TTTTACTTTTATTAATTACTCTTTATTTTTTACTA
63 TT--TTTACTCTTTACTAATT-ACCTACTTTTACTATTACTAATTACTCTTTACTGATTACCA
* * * * * *
38638 TTTTACTGTTTACTGATTAC-C-ATTACTTTTTACTGATTA-C-TATTACTCTTTACTGATTA-C
1 TTTT--TCTTTACCGATTACTCTTTTAC-TTTTACTAATTACCATTTTACTTTTTACTGATTACC
* *
38698 TCTTTTACT-TGTTACTGATTA-CT-C-TTTACTCTTTACTAATTAC
63 T-TTTTACTCT-TTACTAATTACCTACTTTTACT-ATTACTAATTAC
38741 CATTTTACCT
Statistics
Matches: 185, Mismatches: 19, Indels: 46
0.74 0.08 0.18
Matches are distributed among these distances:
118 8 0.04
119 23 0.12
120 7 0.04
121 60 0.32
122 4 0.02
123 28 0.15
124 26 0.14
125 29 0.16
ACGTcount: A:0.21, C:0.20, G:0.03, T:0.55
Consensus pattern (122 bp):
TTTTTCTTTACCGATTACTCTTTTACTTTTACTAATTACCATTTTACTTTTTACTGATTACCTTT
TTACTCTTTACTAATTACCTACTTTTACTATTACTAATTACTCTTTACTGATTACCA
Found at i:38641 original size:35 final size:36
Alignment explanation
Indices: 38583--38776 Score: 125
Period size: 35 Copynumber: 5.5 Consensus size: 36
38573 TCTCTTTACT
* * * *
38583 TTACTCTTTACTCTTCACCATTTTACT-TTTATTAA
1 TTACTCTTTACTTTTTACTATTTTACTGTTTACTAA
* *
38618 TTACTCTTTATTTTTTACTATTTTACTGTTTACTGA
1 TTACTCTTTACTTTTTACTATTTTACTGTTTACTAA
* * **
38654 TTAC-CATTACTTTTTACTGA--TTACT-ATTACTCT
1 TTACTCTTTACTTTTTACT-ATTTTACTGTTTACTAA
** * * **
38687 TTACTGATTACTCTTTTACT-TGTTACTGATTACTCT
1 TTACTCTTTACT-TTTTACTATTTTACTGTTTACTAA
** *
38723 TTACTCTTTACTAATTACCATTTTACCT-TTTACTAA
1 TTACTCTTTACTTTTTACTATTTTA-CTGTTTACTAA
*
38759 TTA-TCCTTACTTTTTACT
1 TTACTCTTTACTTTTTACT
38777 GATTACTATT
Statistics
Matches: 125, Mismatches: 25, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
33 9 0.07
34 11 0.09
35 62 0.50
36 41 0.33
37 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.03, T:0.55
Consensus pattern (36 bp):
TTACTCTTTACTTTTTACTATTTTACTGTTTACTAA
Found at i:38712 original size:15 final size:14
Alignment explanation
Indices: 38640--38740 Score: 64
Period size: 14 Copynumber: 7.3 Consensus size: 14
38630 TTTTACTATT
*
38640 TTACTGTTTACTGA
1 TTACTCTTTACTGA
* **
38654 TTAC-CATTACTTT
1 TTACTCTTTACTGA
**
38667 TTACTGATTACT-A
1 TTACTCTTTACTGA
38680 TTACTCTTTACTGA
1 TTACTCTTTACTGA
38694 TTACTCTTTTACTTG-
1 TTACTC-TTTAC-TGA
** **
38709 TTACTGATTACTCT
1 TTACTCTTTACTGA
*
38723 TTACTCTTTACTAA
1 TTACTCTTTACTGA
38737 TTAC
1 TTAC
38741 CATTTTACCT
Statistics
Matches: 67, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
13 20 0.30
14 35 0.52
15 10 0.15
16 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.06, T:0.51
Consensus pattern (14 bp):
TTACTCTTTACTGA
Found at i:38746 original size:105 final size:104
Alignment explanation
Indices: 38398--38807 Score: 314
Period size: 105 Copynumber: 3.9 Consensus size: 104
38388 CTATTTTTTC
* * *
38398 TTTACTGATTACTCTTTTACTTTTTACTAATTACCATTTTACTTTTTACTGATTACCTTTTTACT
1 TTTACTGATTACTCATTTACTCTTTACTAATTACCATTTTAC-TTTTACTGATTACC--ATTACT
* * *
38463 CTTTT-CTAATTACCATTACT-TTTACTGATTA--CTATTACT
63 -TTTTACTGATTACTATTACTCTTTACTGATTACTCTTTTACT
* ** * **
38502 CTTTACTGATTAC-CATTT--TTTTTACCGATTA-CTTTTTAC-TTTACTCTTTACCATTTTACT
1 -TTTACTGATTACTCATTTACTCTTTACTAATTACCATTTTACTTTTACTGATTACCA--TTACT
* ** *
38562 TTTTACTGATCT-CTCTT--TACTTTACTCTTTACTC-TTCACCAT
63 TTTTACTGAT-TACTATTACT-CTTTACTGATTACTCTTTTA-C-T
* * * * ** *
38604 TTTACT-TTTA-TTAATTACTCTTTATTTTTTACTATTTTACTGTTTACTGATTACCATTACTTT
1 TTTACTGATTACTCATTTACTCTTTACTAATTACCATTTTACT-TTTACTGATTACCATTACTTT
38667 TTACTGATTACTATTACTCTTTACTGATTACTCTTTTACT
65 TTACTGATTACTATTACTCTTTACTGATTACTCTTTTACT
*
38707 TGTTACTGATTACTC-TTTACTCTTTACTAATTACCATTTTACCTTTTACTAATTATCC-TTACT
1 T-TTACTGATTACTCATTTACTCTTTACTAATTACCATTTTA-CTTTTACTGATTA-CCATTACT
* *
38770 TTTTACTGATTACTATTTTACTCTTTTCTAATTACTCT
63 TTTTACTGATTACTA--TTACTCTTTACTGATTACTCT
38808 GATTATCACT
Statistics
Matches: 238, Mismatches: 40, Indels: 52
0.72 0.12 0.16
Matches are distributed among these distances:
97 1 0.00
98 4 0.02
99 32 0.13
100 9 0.04
101 15 0.06
102 21 0.09
103 27 0.11
104 23 0.10
105 82 0.34
106 5 0.02
107 19 0.08
ACGTcount: A:0.22, C:0.20, G:0.03, T:0.55
Consensus pattern (104 bp):
TTTACTGATTACTCATTTACTCTTTACTAATTACCATTTTACTTTTACTGATTACCATTACTTTT
TACTGATTACTATTACTCTTTACTGATTACTCTTTTACT
Found at i:38805 original size:85 final size:83
Alignment explanation
Indices: 38639--38807 Score: 207
Period size: 85 Copynumber: 2.0 Consensus size: 83
38629 TTTTTACTAT
* * * * *
38639 TTTACTGTTTACTGATTACCATTACTTTTTACTGATTACTATTACTCTTTACTGATTACTCTTTT
1 TTTACTCTTTACTAATTACCATTACCTTTTACTAATTACTATTACTCTTTACTGATTACTATTTT
*
38704 ACTTGTTACTGATTACTC
66 ACTTGTTACTAATTACTC
* *
38722 TTTACTCTTTACTAATTACCATTTTACCTTTTACTAATTA-TCCTTACTTTTTACTGATTACTAT
1 TTTACTCTTTACTAATTACCA--TTACCTTTTACTAATTACT-ATTACTCTTTACTGATTACTAT
*
38786 TTTACTCT-TTTCTAATTACTC
63 TTTACT-TGTTACTAATTACTC
38807 T
1 T
38808 GATTATCACT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
83 19 0.26
84 1 0.01
85 52 0.71
86 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (83 bp):
TTTACTCTTTACTAATTACCATTACCTTTTACTAATTACTATTACTCTTTACTGATTACTATTTT
ACTTGTTACTAATTACTC
Found at i:38863 original size:30 final size:30
Alignment explanation
Indices: 38827--38918 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
38817 TTTACTCTTT
* * *
38827 ACTGATTGCTTTTTCTTATTGACCTTAGTC
1 ACTGATTGCTTTTCCTTATTGAACTTAATC
* *
38857 ACTGATTACTTTTCCTTATTGAACTTAATT
1 ACTGATTGCTTTTCCTTATTGAACTTAATC
* *
38887 ACTGATTGCCCTTTTACTTTTTGGAACTTAAT
1 ACTGATTG--CTTTTCCTTATT-GAACTTAAT
38919 TACTCTGATT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
30 32 0.63
32 10 0.20
33 9 0.18
ACGTcount: A:0.22, C:0.18, G:0.11, T:0.49
Consensus pattern (30 bp):
ACTGATTGCTTTTCCTTATTGAACTTAATC
Found at i:42239 original size:21 final size:21
Alignment explanation
Indices: 42213--42261 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
42203 GCGCTGGGGG
* *
42213 CCCATGTGGTATGCTTGGCAA
1 CCCATGTGGTATGCCTCGCAA
* *
42234 CCCATGTGGTTTGCCTCGCGA
1 CCCATGTGGTATGCCTCGCAA
42255 CCCATGT
1 CCCATGT
42262 ACTCCAGTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.14, C:0.31, G:0.27, T:0.29
Consensus pattern (21 bp):
CCCATGTGGTATGCCTCGCAA
Found at i:44394 original size:27 final size:27
Alignment explanation
Indices: 44363--44467 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
44353 GTTTGCAAAT
44363 ATGTAAAATTAGCCAATGTGAAAGGAA
1 ATGTAAAATTAGCCAATGTGAAAGGAA
*
44390 ATGT--AA--AG-----GAGAAAGGAA
1 ATGTAAAATTAGCCAATGTGAAAGGAA
44408 ATGTAAAATTAGCCAATGTGAAAGGAA
1 ATGTAAAATTAGCCAATGTGAAAGGAA
44435 ATGTAAAATTAGCCAATGTGAAAGGAA
1 ATGTAAAATTAGCCAATGTGAAAGGAA
44462 ATGTAA
1 ATGTAA
44468 TTCAATTATT
Statistics
Matches: 67, Mismatches: 2, Indels: 18
0.77 0.02 0.21
Matches are distributed among these distances:
18 13 0.19
20 2 0.03
22 2 0.03
23 2 0.03
25 2 0.03
27 46 0.69
ACGTcount: A:0.50, C:0.06, G:0.24, T:0.21
Consensus pattern (27 bp):
ATGTAAAATTAGCCAATGTGAAAGGAA
Found at i:46770 original size:30 final size:30
Alignment explanation
Indices: 46734--46829 Score: 131
Period size: 33 Copynumber: 3.1 Consensus size: 30
46724 ATCGCATGCA
46734 CCATCGCATGGGGCAACCGGCCACAACCGG
1 CCATCGCATGGGGCAACCGGCCACAACCGG
*
46764 CCATCGCATGGAGCATCAACCGGCCACAACCGG
1 CCATCGCATGG-G--GCAACCGGCCACAACCGG
*
46797 CCATCGCATGGGGCATCC-GCGCACAACCGG
1 CCATCGCATGGGGCAACCGGC-CACAACCGG
46827 CCA
1 CCA
46830 ATGGATCCTT
Statistics
Matches: 59, Mismatches: 3, Indels: 8
0.84 0.04 0.11
Matches are distributed among these distances:
29 2 0.03
30 27 0.46
31 1 0.02
32 1 0.02
33 28 0.47
ACGTcount: A:0.24, C:0.41, G:0.27, T:0.08
Consensus pattern (30 bp):
CCATCGCATGGGGCAACCGGCCACAACCGG
Found at i:49202 original size:33 final size:33
Alignment explanation
Indices: 49155--49261 Score: 110
Period size: 33 Copynumber: 3.2 Consensus size: 33
49145 CGCCAAGCGA
*
49155 TGGCCGGTTG-TGGCCGGACATGTCC-ATGTCGCG
1 TGGCCGG-TGATGGCCGGACATCTCCGA-GTCGCG
* *
49188 TGGCTGGTGATGGCCGGGCATCTCCGAGTCGCG
1 TGGCCGGTGATGGCCGGACATCTCCGAGTCGCG
* * * * *
49221 TGGCCGGTGTTGGCCGGGCTTCTCCAAGTCGCA
1 TGGCCGGTGATGGCCGGACATCTCCGAGTCGCG
49254 TGGCCGGT
1 TGGCCGGT
49262 CACTCGCGCC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
32 2 0.03
33 61 0.95
34 1 0.02
ACGTcount: A:0.08, C:0.28, G:0.40, T:0.23
Consensus pattern (33 bp):
TGGCCGGTGATGGCCGGACATCTCCGAGTCGCG
Found at i:53040 original size:33 final size:33
Alignment explanation
Indices: 52997--53063 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
52987 TCGTATGGGG
*
52997 CAACCGGCCACAACCGGCCATCGCATGGAGCAT
1 CAACCGGCCACAACCGGCCATCCCATGGAGCAT
* *
53030 CAACTGGCCACAACCGGCCATCCCATGGGGCAT
1 CAACCGGCCACAACCGGCCATCCCATGGAGCAT
53063 C
1 C
53064 CGCGCACAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.25, C:0.40, G:0.24, T:0.10
Consensus pattern (33 bp):
CAACCGGCCACAACCGGCCATCCCATGGAGCAT
Found at i:57477 original size:35 final size:31
Alignment explanation
Indices: 57417--57633 Score: 116
Period size: 35 Copynumber: 6.9 Consensus size: 31
57407 TTGCCATTGA
* *
57417 TTTTTACTGATTAATAATTTACCTTTTTACCATT
1 TTTTTACTGATTACT-CTTTACC--TTTACCATT
57451 TTTTCTACTGATTACTCTTTATCCTTTACC---
1 TTTT-TACTGATTACTCTTTA-CCTTTACCATT
* * * *
57481 GTTTTACTGATTACTCTTCACTCCTTACTATTT
1 TTTTTACTGATTACTCTTTAC-CTTTACCA-TT
* *
57514 TTCTTTACTAATAACTCTTTACTCTTTACCATTTT
1 TT-TTTACTGATTACTCTTTAC-CTTTACCA--TT
57549 TTCTTTACTGATTACTCTTTACTCTTTA-C---
1 TT-TTTACTGATTACTCTTTAC-CTTTACCATT
* *
57578 TATTTACTGATCACTCTTTA-CTATT----TT
1 TTTTTACTGATTACTCTTTACCT-TTACCATT
57605 TTCTTTACTGATTACTCTTTACTCTTTAC
1 TT-TTTACTGATTACTCTTTAC-CTTTAC
57634 TGATTACTCT
Statistics
Matches: 148, Mismatches: 18, Indels: 37
0.73 0.09 0.18
Matches are distributed among these distances:
26 2 0.01
27 3 0.02
28 35 0.24
29 23 0.16
30 5 0.03
33 7 0.05
34 32 0.22
35 41 0.28
ACGTcount: A:0.20, C:0.22, G:0.03, T:0.54
Consensus pattern (31 bp):
TTTTTACTGATTACTCTTTACCTTTACCATT
Found at i:57514 original size:29 final size:29
Alignment explanation
Indices: 57456--57514 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
57446 CCATTTTTTC
* *
57456 TACTGATTACTCTTTATCCTTTACCGTTT
1 TACTGATTACTCTTCATCCTTTACCATTT
*
57485 TACTGATTACTCTTCACTCC-TTACTATTT
1 TACTGATTACTCTTCA-TCCTTTACCATTT
57514 T
1 T
57515 TCTTTACTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 23 0.88
30 3 0.12
ACGTcount: A:0.19, C:0.25, G:0.05, T:0.51
Consensus pattern (29 bp):
TACTGATTACTCTTCATCCTTTACCATTT
Found at i:57539 original size:7 final size:7
Alignment explanation
Indices: 57491--57655 Score: 91
Period size: 7 Copynumber: 23.6 Consensus size: 7
57481 GTTTTACTGA
57491 TTACTCT
1 TTACTCT
* *
57498 TCACTCC
1 TTACTCT
*
57505 TTACTAT
1 TTACTCT
*
57512 TT-TTCT
1 TTACTCT
**
57518 TTACTAA
1 TTACTCT
*
57525 TAACTCT
1 TTACTCT
57532 TTACTCT
1 TTACTCT
57539 TTAC-CAT
1 TTACTC-T
**
57546 TTTTTCT
1 TTACTCT
**
57553 TTACTGA
1 TTACTCT
57560 TTACTCT
1 TTACTCT
57567 TTACTCT
1 TTACTCT
*
57574 TTACTAT
1 TTACTCT
**
57581 TTACTGA
1 TTACTCT
*
57588 TCACTCT
1 TTACTCT
*
57595 TTACTAT
1 TTACTCT
**
57602 TTTTTCT
1 TTACTCT
**
57609 TTACTGA
1 TTACTCT
57616 TTACTCT
1 TTACTCT
57623 TTACTCT
1 TTACTCT
**
57630 TTACTGA
1 TTACTCT
57637 TTACTCTT
1 TTACTC-T
*
57645 TTACTTT
1 TTACTCT
57652 TTAC
1 TTAC
57656 AAATTACCAT
Statistics
Matches: 110, Mismatches: 44, Indels: 8
0.68 0.27 0.05
Matches are distributed among these distances:
6 5 0.05
7 99 0.90
8 6 0.05
ACGTcount: A:0.19, C:0.23, G:0.02, T:0.55
Consensus pattern (7 bp):
TTACTCT
Found at i:57573 original size:42 final size:42
Alignment explanation
Indices: 57527--58012 Score: 144
Period size: 42 Copynumber: 12.0 Consensus size: 42
57517 TTTACTAATA
**
57527 ACTCTTTACTCTTTACCATTTTTTCTTTACTGATTACTCTTT
1 ACTCTTTACTAATTACCATTTTTTCTTTACTGATTACTCTTT
* * ***
57569 ACTCTTTACTATTTACTGA-TCACTCTTTACT-A-T--T-TTT
1 ACTCTTTACTAATTAC-CATTTTTTCTTTACTGATTACTCTTT
* **
57606 --TCTTTACTGATTACTC-TTTACTCTTTACTGATTACTCTTTT
1 ACTCTTTACTAATTAC-CATTTTTTCTTTACTGATTACTC-TTT
* * *
57647 ACTTTTTACAAATTACCATTTTACTT-TTTACTGATTACCTTTTT
1 ACTCTTTACTAATTACCATTTT--TTCTTTACTGATTA-CTCTTT
* ** *
57691 ACTCTTTTCTAATTACCATTACTTC-TTGCTGATTA--C--T
1 ACTCTTTACTAATTACCATTTTTTCTTTACTGATTACTCTTT
* * *
57728 A----TTACTGATTACCA-TTTTT-TTTACCGATTACTTTTT
1 ACTCTTTACTAATTACCATTTTTTCTTTACTGATTACTCTTT
** *
57764 A--CTTTACTCTTTACCATTTTACTT-TTTACTGATCTCTCTTTACTTT
1 ACTCTTTACTAATTACCATTTT--TTCTTTACTGAT-T-AC--T-CTTT
** * *
57810 ACTCTTTACTCTTTACCA-TTTTACTTTTACTAATTACTCTTT
1 ACTCTTTACTAATTACCATTTTTTC-TTTACTGATTACTCTTT
* ** * *
57852 A-TGTTTTACT-A-T----TTTACTGTTTACTGATTACT-ATT
1 ACT-CTTTACTAATTACCATTTTTTCTTTACTGATTACTCTTT
* *
57887 ACTCTTTACTGATTACTC-TTTTACTT-GTTACTGATTACTCTTT
1 ACTCTTTACTAATTAC-CATTTT--TTCTTTACTGATTACTCTTT
** * *
57930 ACTCTTTACTAATTACCATTTTACCTTTTACTAATTA-TCCTT
1 ACTCTTTACTAATTACCATTTTTTC-TTTACTGATTACTCTTT
* * * * * *
57972 ACTTTTTACTGATTACTATTTTACTCTTTTCTAATTACTCT
1 ACTCTTTACTAATTACCATTTT-TTCTTTACTGATTACTCT
58013 GAATATCACT
Statistics
Matches: 330, Mismatches: 63, Indels: 101
0.67 0.13 0.20
Matches are distributed among these distances:
32 11 0.03
33 11 0.03
35 33 0.10
36 17 0.05
37 9 0.03
38 12 0.04
39 4 0.01
40 2 0.01
41 18 0.05
42 94 0.28
43 51 0.15
44 31 0.09
45 6 0.02
46 5 0.02
47 11 0.03
48 15 0.05
ACGTcount: A:0.21, C:0.21, G:0.03, T:0.55
Consensus pattern (42 bp):
ACTCTTTACTAATTACCATTTTTTCTTTACTGATTACTCTTT
Found at i:57583 original size:28 final size:28
Alignment explanation
Indices: 57552--57634 Score: 121
Period size: 28 Copynumber: 3.0 Consensus size: 28
57542 CCATTTTTTC
57552 TTTACTGATTACTCTTTACTCTTTACTA
1 TTTACTGATTACTCTTTACTCTTTACTA
* * ** *
57580 TTTACTGATCACTCTTTACTATTTTTTC
1 TTTACTGATTACTCTTTACTCTTTACTA
57608 TTTACTGATTACTCTTTACTCTTTACT
1 TTTACTGATTACTCTTTACTCTTTACT
57635 GATTACTCTT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.19, C:0.22, G:0.04, T:0.55
Consensus pattern (28 bp):
TTTACTGATTACTCTTTACTCTTTACTA
Found at i:57654 original size:22 final size:21
Alignment explanation
Indices: 57608--57726 Score: 109
Period size: 22 Copynumber: 5.6 Consensus size: 21
57598 CTATTTTTTC
*
57608 TTTACTGATTA-CTCTTTACTC
1 TTTACTGATTACCT-TTTACTT
57629 TTTACTGATTACTCTTTTACTT
1 TTTACTGATTAC-CTTTTACTT
**
57651 TTTACAAATTACCATTTTACTT
1 TTTACTGATTACC-TTTTACTT
57673 TTTACTGATTACCTTTTTACTCT
1 TTTACTGATTACC-TTTTACT-T
* *
57696 TTT-CTAATTACC-ATTACTT
1 TTTACTGATTACCTTTTACTT
* *
57715 CTTGCTGATTAC
1 TTTACTGATTAC
57727 TATTACTGAT
Statistics
Matches: 83, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
19 3 0.04
20 12 0.14
21 12 0.14
22 50 0.60
23 6 0.07
ACGTcount: A:0.22, C:0.21, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTACTGATTACCTTTTACTT
Found at i:57765 original size:7 final size:7
Alignment explanation
Indices: 57755--57939 Score: 53
Period size: 7 Copynumber: 26.7 Consensus size: 7
57745 TTTTTACCGA
57755 TTACTTT
1 TTACTTT
57762 TTAC--T
1 TTACTTT
*
57767 TTACTCT
1 TTACTTT
*
57774 TTACCATT
1 TTA-CTTT
57782 TTACTTT
1 TTACTTT
*
57789 TTACTGAT
1 TTACT-TT
* *
57797 CT-CTCT
1 TTACTTT
57803 TTAC--T
1 TTACTTT
*
57808 TTACTCT
1 TTACTTT
*
57815 TTACTCT
1 TTACTTT
*
57822 TTACCATT
1 TTA-CTTT
57830 TTAC-TT
1 TTACTTT
**
57836 TTACTAA
1 TTACTTT
*
57843 TTACTCT
1 TTACTTT
57850 TTA-TGTT
1 TTACT-TT
57857 TTACTATT
1 TTACT-TT
*
57865 TTACTGT
1 TTACTTT
**
57872 TTACTGA
1 TTACTTT
*
57879 TTAC-TA
1 TTACTTT
*
57885 TTACTCT
1 TTACTTT
**
57892 TTACTGA
1 TTACTTT
57899 TTACTCTT
1 TTACT-TT
*
57907 TTACTTG
1 TTACTTT
**
57914 TTACTGA
1 TTACTTT
*
57921 TTACTCT
1 TTACTTT
*
57928 TTACTCT
1 TTACTTT
57935 TTACT
1 TTACT
57940 AATTACCATT
Statistics
Matches: 136, Mismatches: 29, Indels: 26
0.71 0.15 0.14
Matches are distributed among these distances:
5 10 0.07
6 14 0.10
7 87 0.64
8 25 0.18
ACGTcount: A:0.19, C:0.21, G:0.04, T:0.56
Consensus pattern (7 bp):
TTACTTT
Found at i:57823 original size:14 final size:14
Alignment explanation
Indices: 57806--57939 Score: 71
Period size: 14 Copynumber: 9.5 Consensus size: 14
57796 TCTCTCTTTA
57806 CTTTACTCTTTACT
1 CTTTACTCTTTACT
57820 CTTTAC-CATTTTACT
1 CTTTACTC--TTTACT
**
57835 -TTTACTAATTACT
1 CTTTACTCTTTACT
*
57848 CTTTA-TGTTTTACT
1 CTTTACT-CTTTACT
* *
57862 ATTTTACTGTTTACT
1 -CTTTACTCTTTACT
** *
57877 GATTACT-ATTACT
1 CTTTACTCTTTACT
**
57890 CTTTACTGATTACT
1 CTTTACTCTTTACT
57904 CTTTTACT-TGTTACT
1 C-TTTACTCT-TTACT
**
57919 GATTACTCTTTACT
1 CTTTACTCTTTACT
57933 CTTTACT
1 CTTTACT
57940 AATTACCATT
Statistics
Matches: 93, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
13 17 0.18
14 47 0.51
15 28 0.30
16 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.04, T:0.55
Consensus pattern (14 bp):
CTTTACTCTTTACT
Found at i:57860 original size:35 final size:36
Alignment explanation
Indices: 57808--57895 Score: 110
Period size: 35 Copynumber: 2.5 Consensus size: 36
57798 TCTCTTTACT
57808 TTACTCTTTACTCTTTACCATTTTACT-TTTACTAA
1 TTACTCTTTACTCTTTACCATTTTACTGTTTACTAA
* * *
57843 TTACTCTTTA-TGTTTTACTATTTTACTGTTTACTGA
1 TTACTCTTTACT-CTTTACCATTTTACTGTTTACTAA
*
57879 TTACT-ATTACTCTTTAC
1 TTACTCTTTACTCTTTAC
57896 TGATTACTCT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
34 1 0.02
35 31 0.69
36 13 0.29
ACGTcount: A:0.22, C:0.19, G:0.03, T:0.56
Consensus pattern (36 bp):
TTACTCTTTACTCTTTACCATTTTACTGTTTACTAA
Found at i:57874 original size:22 final size:21
Alignment explanation
Indices: 57834--57894 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
57824 ACCATTTTAC
57834 TTTTACTAATTACTCTTTATG
1 TTTTACTAATTACTCTTTATG
* *
57855 TTTTACTATTTTACTGTTTACTG
1 TTTTACTA-ATTACTCTTTA-TG
*
57878 -ATTACT-ATTACTCTTTA
1 TTTTACTAATTACTCTTTA
57895 CTGATTACTC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
20 9 0.27
21 8 0.24
22 14 0.42
23 2 0.06
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.57
Consensus pattern (21 bp):
TTTTACTAATTACTCTTTATG
Found at i:58008 original size:22 final size:22
Alignment explanation
Indices: 57843--58010 Score: 145
Period size: 22 Copynumber: 7.9 Consensus size: 22
57833 CTTTTACTAA
*
57843 TTACTCTTTA-TGTTTTACTATT
1 TTACTCTTTACTG-ATTACTATT
*
57865 TTACTGTTTACTGATTACTA--
1 TTACTCTTTACTGATTACTATT
*
57885 TTACTCTTTACTGATTACTCTT
1 TTACTCTTTACTGATTACTATT
*
57907 TTACT-TGTTACTGATTACT-CT
1 TTACTCT-TTACTGATTACTATT
* *
57928 TTACTCTTTACTAATTACCATT
1 TTACTCTTTACTGATTACTATT
* **
57950 TTAC-CTTTTACTAATTA-T-CC
1 TTACTC-TTTACTGATTACTATT
*
57970 TTACTTTTTACTGATTACTATT
1 TTACTCTTTACTGATTACTATT
* *
57992 TTACTCTTTTCTAATTACT
1 TTACTCTTTACTGATTACT
58011 CTGAATATCA
Statistics
Matches: 118, Mismatches: 18, Indels: 20
0.76 0.12 0.13
Matches are distributed among these distances:
20 32 0.27
21 19 0.16
22 65 0.55
23 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.04, T:0.55
Consensus pattern (22 bp):
TTACTCTTTACTGATTACTATT
Done.