Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008396.1 Corchorus capsularis cultivar CVL-1 contig08417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12744

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4950--5017
27
2.5
27
79
11
77
27
11
27
32
1.92
9449--9495
14
3.4
14
80
11
60
48
4
17
29
1.65
9449--9547
22
4.2
22
71
18
65
46
6
20
27
1.74
9510--9576
22
3.1
21
78
16
66
38
5
22
32
1.78
9551--9592
14
2.8
15
82
10
50
38
2
23
35
1.68
9579--9656
14
5.4
14
76
14
52
50
2
17
29
1.60
9470--9721
80
3.2
79
76
9
208
45
5
21
28
1.73
9558--9642
22
3.9
22
80
0
89
48
3
20
28
1.66
9639--9721
22
3.8
22
83
1
87
43
4
24
27
1.74
9728--9851
24
5.0
24
73
13
108
41
8
23
27
1.82
9786--9873
16
5.4
16
75
11
65
45
4
21
28
1.71
9796--9853
8
7.2
8
80
7
64
44
3
22
29
1.69
10009--10085
14
5.3
15
72
21
58
42
0
25
31
1.55
10037--10080
8
5.8
8
81
10
56
45
0
25
29
1.54
10037--10085
22
2.2
21
96
0
62
44
0
24
30
1.54
10273--10474
70
2.9
70
91
0
314
29
16
27
26
1.97

Tables:   1

The End!