Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000840.1 Corchorus capsularis cultivar CVL-1 contig00840, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2091
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:256 original size:26 final size:27

Alignment explanation


    Indices: 222--272  Score: 68
    Period size: 27  Copynumber: 1.9  Consensus size: 27

        212 TTGAATGATT

                *                      
        222 GAGATTTG-AAAGTTTGAAGGTTGAGA
          1 GAGAATTGAAAAGTTTGAAGGTTGAGA

                        *       *    
        248 GAGAATTGAAAATTTTGAAGTTTGA
          1 GAGAATTGAAAAGTTTGAAGGTTGA

        273 AGGAAAGGGC


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  26    7  0.33
  27   14  0.67

ACGTcount: A:0.37, C:0.00, G:0.29, T:0.33


Consensus pattern (27 bp):   
GAGAATTGAAAAGTTTGAAGGTTGAGA
Done.