Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008402.1 Corchorus capsularis cultivar CVL-1 contig08423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63595

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2073--2221
75
2.0
75
93
0
253
43
20
20
15
1.87
3395--3450
16
3.5
16
80
9
78
51
30
12
5
1.61
3383--3465
32
2.6
32
92
0
139
51
27
12
8
1.67
3408--3465
16
3.6
16
80
0
71
51
31
12
5
1.61
3602--3689
32
2.8
32
85
0
113
38
35
9
17
1.81
3619--3664
17
2.9
16
78
15
51
39
36
6
17
1.76
3635--3682
16
2.9
17
75
9
55
35
37
8
18
1.81
3697--3738
17
2.4
18
80
11
52
47
38
9
4
1.57
5657--5737
30
2.7
30
80
0
99
53
7
2
37
1.43
11866--11919
21
2.4
22
78
12
65
46
5
38
9
1.59
18932--19045
32
3.6
32
81
3
131
18
9
31
40
1.83
19178--19216
20
2.0
20
85
10
53
35
5
5
53
1.45
19266--19322
16
3.7
15
81
11
53
8
7
26
57
1.54
19699--19725
14
1.9
14
100
0
54
0
18
0
81
0.69
20421--20461
21
2.0
21
85
0
55
29
21
9
39
1.86
25968--26001
9
3.8
9
92
0
50
11
0
5
82
0.83
31935--31973
20
2.0
19
90
5
60
53
0
0
46
1.00
35701--35805
33
3.2
32
81
9
104
41
22
9
25
1.84
37274--37325
22
2.4
22
80
6
61
19
15
23
42
1.89
37718--37747
11
2.8
11
95
5
53
53
0
0
46
1.00
39960--40274
54
5.9
53
77
7
291
27
26
10
36
1.88
39960--40274
105
3.0
104
79
5
319
27
26
10
36
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40256--40357
42
2.4
42
100
0
204
22
18
11
47
1.81
43563--43670
33
3.3
32
82
6
101
9
29
37
24
1.86
48990--49018
5
6.0
5
92
8
51
17
0
0
82
0.66
49097--49130
17
2.0
17
94
0
59
23
5
14
55
1.61
50089--50197
33
3.3
34
82
6
109
10
27
37
24
1.88
51923--51956
12
2.8
12
91
8
52
26
26
23
23
2.00
54578--54636
28
2.1
28
100
0
118
27
6
25
40
1.80
62031--62098
33
2.1
33
97
0
127
22
19
22
36
1.95
62792--62854
32
2.0
31
90
3
99
28
7
30
33
1.86

Tables:   1

The End!