Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008405.1 Corchorus capsularis cultivar CVL-1 contig08426, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35950

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2725--2753
6
4.8
6
100
0
58
68
0
17
13
1.20
3320--3345
3
8.7
3
100
0
52
30
0
0
69
0.89
12028--12073
21
2.0
23
84
16
60
43
10
8
36
1.71
13086--13110
13
1.9
13
100
0
50
20
40
8
32
1.81
14587--14697
22
5.0
22
85
4
150
17
21
36
25
1.95
14885--14971
44
2.0
43
86
6
122
27
16
26
29
1.96
18019--18796
49
15.9
47
82
6
628
31
15
30
22
1.95
18019--18781
195
3.9
195
82
5
697
30
15
30
23
1.95
18047--18802
97
7.7
99
82
3
701
32
15
30
22
1.94
23067--23095
12
2.5
12
94
5
51
24
10
17
48
1.78
24719--24753
16
2.1
17
89
5
54
22
11
8
57
1.61
24971--25013
18
2.4
17
77
11
50
9
2
16
72
1.21
26845--26932
31
2.8
31
98
1
167
37
32
10
19
1.85
26956--27041
45
1.9
45
97
0
163
30
26
17
25
1.97
29004--29129
36
3.5
36
87
0
162
20
34
22
23
1.97
30462--30505
13
3.3
13
83
3
52
65
4
9
20
1.38
30674--30812
34
3.9
33
76
14
100
16
28
25
28
1.97
31881--31968
31
2.8
31
94
1
149
38
32
10
18
1.84
32957--32982
6
4.3
6
100
0
52
0
0
34
65
0.93
33267--33514
129
1.9
127
86
4
347
41
11
12
34
1.79
35355--35402
22
2.2
22
88
3
71
43
16
20
18
1.88
35814--35863
26
1.9
26
100
0
100
26
42
8
24
1.82

Tables:   1

The End!