Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008407.1 Corchorus capsularis cultivar CVL-1 contig08428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50465

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
371--400
2
15.0
2
100
0
60
50
0
0
50
1.00
1045--1107
28
2.1
29
85
8
83
30
14
3
52
1.57
1647--1779
22
6.0
22
72
11
92
33
9
18
39
1.83
1822--2232
22
18.9
22
69
16
117
39
9
15
36
1.79
2066--2139
37
2.0
37
84
10
98
40
9
8
41
1.67
2386--2504
22
5.4
22
69
4
78
42
8
16
32
1.79
2403--2504
44
2.3
44
77
3
116
41
8
17
32
1.80
2659--2711
22
2.3
23
83
3
63
32
13
16
37
1.88
6837--6863
2
13.5
2
100
0
54
48
0
0
51
1.00
15719--15743
11
2.3
11
100
0
50
68
8
0
24
1.16
17529--17562
13
2.7
13
90
4
52
64
2
0
32
1.08
17770--17967
110
1.8
110
94
0
351
27
11
13
46
1.78
18715--18764
26
1.9
26
91
0
82
48
18
10
24
1.78
26054--26100
20
2.3
22
78
14
64
4
4
19
72
1.18
26051--26094
20
2.2
21
88
11
67
4
4
18
72
1.19
28248--28277
2
15.0
2
100
0
60
50
0
0
50
1.00
29732--29761
3
10.0
3
100
0
60
33
0
0
66
0.92
33861--33899
11
3.5
11
89
10
53
66
5
20
7
1.36
34423--34490
29
2.3
30
87
2
93
25
22
14
38
1.92
34697--34774
29
2.6
30
81
4
95
43
14
23
19
1.87
40925--40991
25
2.8
24
82
8
84
35
23
0
40
1.55
41001--41080
26
3.2
26
84
5
112
55
10
1
33
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41001--41118
52
2.4
51
78
17
124
54
10
0
34
1.40
41061--41118
18
3.1
18
75
7
53
55
10
0
34
1.34

Tables:   1

The End!